Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02416 ATGTCCAGAAGCCGTTCAAGAAGTGCATCAAGGGATGCTGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGGGAACTGGAAAATCATTTTGCTGCTGAGGGAAAAGTGATAGATGTACATCTGGTGGTCGATCCTTGGACAAGGGAATCTCGTGGGTTTGGTTTTGTGACAATGGAGACTGTTGATGTGGCTGATCGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTCATTACAGTGGAGAAGGCCAGAAGGCGACGCGGTCGAACCCCAACACCAGGGAAGTATCTAGGGCTGAGGACTATTCGTGGGCGACGCCGGTCTCCTAGTTACTCTCCTCGACGCTCCCCTAGCTATTCTCCTTACAGAAGAAGCTACAGCCGGTCTCCCTATTCTTCAGACAGAAGCAGGAGTCGTTCTTACTCTCCTGACTACGGGCGGAAGCGATCCTACTCTCCATATTACTCGCAGAGAAGGAGGTCTTATTCTCCATACTACAGCCGGTACAGATCTTATCTGCGATATGATCATGATCGACACAGGTCATATTCTCGCTCTCGCTCTCCTTATAGCAGGTCTCCTGTCAGCATGCGTGAGAGATCATACTCTCCCTATGACTCCCGATATGACTATGGTCGCTCCTACAGAAGGAACCGTTACAGGTCTGTTTCCCGAAGTGCCTCACCCGAAGATCGCTATTTTGGAAGGCATCGTTACAGGTCTGTTTCTCACAGTGCCTCTCCTAGGCCGAGGAGAAGGGAAAGGAGGAGCTACTCACGGAGTGCCACTCCTGTTTCAAAGAGGAGAGACTCGCGAAGTGTGTCCCCCAGGTCAAGGAGGAGTCACTCAAGAAGCTCCAAGAGAAGTGAAAAATATTCTAAACATCAGTCGAGATGCTCCAGTGTGATTGCAAGTTCAAGATCAGTATCGAGGTCTAATACTCCCAGATCTTCCTCTCCTTCTACTTGA 1002 0.491 MSRSRSRSASRDAENPGNNLYVTGLSPRITKRELENHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVDVADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYGRKRSYSPYYSQRRRSYSPYYSRYRSYLRYDHDRHRSYSRSRSPYSRSPVSMRERSYSPYDSRYDYGRSYRRNRYRSVSRSASPEDRYFGRHRYRSVSHSASPRPRRRERRSYSRSATPVSKRRDSRSVSPRSRRSHSRSSKRSEKYSKHQSRCSSVIASSRSVSRSNTPRSSSPST* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02416 333 MobiDBLite consensus disorder prediction 268 283 - -
Lapu6g02416 333 Gene3D - 1 102 IPR012677 -
Lapu6g02416 333 MobiDBLite consensus disorder prediction 307 333 - -
Lapu6g02416 333 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 309 - -
Lapu6g02416 333 SMART rrm1_1 19 92 IPR000504 GO:0003723
Lapu6g02416 333 MobiDBLite consensus disorder prediction 253 267 - -
Lapu6g02416 333 SUPERFAMILY RNA-binding domain, RBD 11 121 IPR035979 GO:0003676
Lapu6g02416 333 MobiDBLite consensus disorder prediction 284 300 - -
Lapu6g02416 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Lapu6g02416 333 MobiDBLite consensus disorder prediction 214 249 - -
Lapu6g02416 333 MobiDBLite consensus disorder prediction 95 168 - -
Lapu6g02416 333 MobiDBLite consensus disorder prediction 190 333 - -
Lapu6g02416 333 MobiDBLite consensus disorder prediction 1 23 - -
Lapu6g02416 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Lapu6g02416 333 MobiDBLite consensus disorder prediction 122 150 - -
Lapu6g02416 333 CDD RRM_SF 20 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02416 Lapu-Chr6 23963313 23965592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02416 19 100 Eukaryotic Initiation Factors Gene Family AT2G36660 30.488 5.28e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02416 - - gmx:100805126 280.026