Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02411 ATGAAAGGCATAGGAGCAGGTGGTGTTATTATTCCGCTTAATGGATGTGGAAACATAAGGGTCTCTAACACTTCTTCTAAGTGTTCTGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTGCGGACAACAAATCCATTCCACGCAGCAACAGCCACAGAACGTTGCAAATAATATTCATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAACCTACGACATTATGTGGCATAAAGGTGCTAGGAAAGTGAACTTTGTTGAACAGCTGTTAGCAAATGAAGTGCCTGTGAAATGGACACAACAAGTCCCTCCACTGTGCTTGAAAGAAGATTTGCATGTGTCAGGGAAGAACCGAAAAGGGGTAGGACGCAGACCTAAGGAAGGGTCTTCTGTCCCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGTTGAAGTTGGTGAAGCAACATGGCATAGGCAAATGGTCTCAGATAGCTGAAAAGTTGGATGGAAGGGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATCAAGAAAGATGGTTGGAGTGAAGAAGAAGAAAGGATATTAATAAAATATCATGCCAAGCTTGGAAACCGGTGGGCAGAGATTGCAAAGAAAATGAAAGGAAGAACAGAAAATGCAATAAAAAACCATTGGAATGCCACCAAAAGGAGACAAAACTCAAAGAGAAAGAACAAAAGAGCAGGAATCGCAAATGGAAAGCCAGTGTCCTCTATTCTGCAAGACTACATCAAAGGTTTGACTCTCACCAACACTTCAACTCCCTCTATAGAACAAACATTAGCACCCCAACACTTATCTGATATTACCAATGACAATATCTCCCTAATGTCTGAGTCCTATGATGATGAGATGTTCTTCATGCAACAACTTTTCAATGAGAATAATGCCATTGTTGAATCTGTTAAGCAGACAAGGAATATCAACAACTTTTCTGCAGCCTTTGATGGTTATCATCATCAAACTAGTAATAATAGCCAGCCTCTCACCCAAGTCACTGAATCAGGGTTTGTTGTTCATTCCAACGTAAACACAAACTCATACATGTCCTTGGATGAGAGTCTTTTCCTCTCTAAAAGGGCTCCTACCGCTGTCAACTACCTTAATTTTGATGTCTGTCTATCTCATTTGCATAATGGAACTGCTGGTTCATCATTTTACTATGATAATGGGATTCACAACGGGAACATGGAGTGGCAGTTGGGGAAGCAAGATTGGTTACTAGGAAAGAGAGATTTGGATATAGCAGAGTTGGTTTCTTCTACT 1317 0.4146 MKGIGAGGVIIPLNGCGNIRVSNTSSKCSVGPPLTAIERFLCGQQIHSTQQQPQNVANNIHASVLDGFGGSTYDIMWHKGARKVNFVEQLLANEVPVKWTQQVPPLCLKEDLHVSGKNRKGVGRRPKEGSSVPWIKGQWTEEEDRKLLKLVKQHGIGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDGWSEEEERILIKYHAKLGNRWAEIAKKMKGRTENAIKNHWNATKRRQNSKRKNKRAGIANGKPVSSILQDYIKGLTLTNTSTPSIEQTLAPQHLSDITNDNISLMSESYDDEMFFMQQLFNENNAIVESVKQTRNINNFSAAFDGYHHQTSNNSQPLTQVTESGFVVHSNVNTNSYMSLDESLFLSKRAPTAVNYLNFDVCLSHLHNGTAGSSFYYDNGIHNGNMEWQLGKQDWLLGKRDLDIAELVSST 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02411 439 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Lapu6g02411 439 FunFam Transcriptional activator Myb isoform A 135 188 - -
Lapu6g02411 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Lapu6g02411 439 Gene3D - 135 187 - -
Lapu6g02411 439 SUPERFAMILY Homeodomain-like 133 229 IPR009057 -
Lapu6g02411 439 Gene3D - 190 248 - -
Lapu6g02411 439 CDD SANT 139 182 IPR001005 -
Lapu6g02411 439 ProSiteProfiles Myb-like domain profile. 136 182 IPR001005 -
Lapu6g02411 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 237 IPR017930 -
Lapu6g02411 439 PANTHER MYB PROTEIN-RELATED 124 273 - -
Lapu6g02411 439 SMART sant 135 184 IPR001005 -
Lapu6g02411 439 SMART sant 187 235 IPR001005 -
Lapu6g02411 439 Pfam Myb-like DNA-binding domain 139 196 - -
Lapu6g02411 439 CDD SANT 191 233 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02411 Lapu-Chr6 23862664 23865598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02411 30 439 MYB Transcription Factor Family AT5G58850 36.865 6.40e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g02411 Myb_DNA-bind_6 2.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02411 K09422 - gmx:100786295 503.056