Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02408 ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTTTATCTCCTCATCCTCTTGGTCCACCTTGGCTGCTTCATCTTCACCACCACCACCGCCGCCGGAGGAAACAAAGCGTCGCCGTCAAAGAAACGCAAAATATCACCTTCATCTCAACCCTCCTCCCCTTCCCACCCCAAATTCAAAACCCACAAAGCCCTTTCCTCTTCTTGGCATTTCATCAAACACCTCCTCTCCACCAAGTCCTGCAAAACCCCCAAAACCACCACCGCCCAATCCTCCCCTCAATCCACCGCTACCACCACCACAACAACCATCTCCGCCGCAGCAGCACAATCCCTCGTTTCACTAACACAACCCGACCCGGACAGAAAACCACCCGGGTCGTGTCCCGAATCCGACATCTCCGCCGACACCAACCTCTTCTTCCCTCTGCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCCACCTCTTAGAAACCCACCAAACCCTCAAACACGCGGTTTCGGACCTATCCGGATCCGACCCAGGTCACAATATCGTCCAGATAATCTTCAAATCGGGCTGGCCCGAATCCAAATCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCGAAGATCCTCGCGAAGTTCGAGGAGTACCGCGAGGTCGTCAAGTCCAAGGCGGCGCGTCACGGCGCTCTCACGCGACGCCGCGATGAGCGCTGCATCGCCGACGGCAACGAGCTGATGCGCTTCCACTGCTCCACGTTTCTATGCGACTTGGGACACAGCGGGGATTCCTCAATTTGTTCGCAGCAATTTTGTAACATATGTGGAATTATTAAGTCGGGGTTTTCCCCAAAACTCGATGGAATTGCCACGCTGTCTACGAGCTGGCGGGCACACGTGGCTATCCCGGATGACGTGGAGCGAGAATTCCGCTTCATGAATGTCAAGCGGGCCATGCTCGTTTGTAGGGTCATTGCGGGTCGGGTTGGATCCGATTCAGACGACGCCGAAAAAGCTGATGCTGGTTTTGATTCCGTAATGGCGAGGGCAGAGACTGGGGTTTACACCCGCCTTGATGACGAGGAGTTGTTGGTGTTTAGTCCTAGGGCTGTACTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1164 0.5473 MASSIATFFNKFLYLLILLVHLGCFIFTTTTAAGGNKASPSKKRKISPSSQPSSPSHPKFKTHKALSSSWHFIKHLLSTKSCKTPKTTTAQSSPQSTATTTTTTISAAAAQSLVSLTQPDPDRKPPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKSSPTITRILKIHNSPKILAKFEEYREVVKSKAARHGALTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFRFMNVKRAMLVCRVIAGRVGSDSDDAEKADAGFDSVMARAETGVYTRLDDEELLVFSPRAVLPCFVIVYSV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02408 387 ProSitePatterns Zinc finger C2H2 type domain signature. 151 172 IPR013087 -
Lapu6g02408 387 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 69 385 - -
Lapu6g02408 387 SUPERFAMILY ADP-ribosylation 176 386 - -
Lapu6g02408 387 Gene3D - 172 386 - -
Lapu6g02408 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 173 IPR013087 -
Lapu6g02408 387 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02408 Lapu-Chr6 23843196 23845165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02408 70 387 C2H2 Transcription Factor Family AT2G29660 54.740 3.42e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g02408 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02408 - - var:108341815 660.603