Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02392 ATGAAGAAAACACCAGTCCACAGTTTGCATCAATCTAATCAAAGAAAAAAGAATGTTGGTGTCCAAGATAGAGGTGCAGGCAATGACACACACAGGCGCAGTGTTGAGAACCGTACTGTTTTGACATATATCAATTCTGTCAAGAATTTCTTTTCATTTTTTCTGTCAGGGAAAAGAAAATTTTCCAAAGAAGCCCCTCAAAGTGATGACGGAAAGAACGCACCCAAAGTTAAAGGGGAACCTTCCTCCACAGATGTATCGTCTGATAGTTCCAAGAATTCATCAAAATGGGTCTTCTCTCAATCCTCCGCATCATCTGGCACTTCAAGTAGTCACCTTGGAATTGGGAACTTTACCTTCGAGGAAATTTACAAGGCAACAGCAAAGTTCTCTGCACTCAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTACAAGGGAAGGCTTTATGATGGATCCCTCGTGGCTGTGAAGCGTGCCAAGAAGGATTTACAAAACAAGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAATATTGAGCACAGGAACCTTGTAAGGTGGCGTGGGTATTTGGAGGATGGAGATGAAAAGATTATTGTTGTTGAATATGTTAGTAATGGAACTCTTCGAGAACATTTAGATGGTATTCGGGGAAATGGACTAGAAATTGGTGAGCGTCTGGACATAGCCATTGATATAGCTCATGGAATTACTTACCTTCACATGTACACAGATCATCCAATTATTCATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGAGCCAAAGTAGCAGACTTTGGTTTTGCTCGGTTGGGTGCTGATGACCCTGCTGCAACCCATATTTCAACTCAAATCAAAGGAACAGCTGGCTACATAGATCCTGATTACATGCGAACGCGACATCTATCTGAAAAGAGTGATGTCTATTCCTTTGGTGTGTTGCTTGTTGAAATTGTGACAGGACGACATCCAGTTGAACCAAAGAGACCTCTCAGTGAGAGAGTTACAATTAAATGGGCAATGCAGATGTTGAAACAAGGAGATATTGTGATTGCCATGGATCCAAGACTGAAGAGAAATCCAGCCTCAAACAAAGCAGTACAGAAGGTTCTCAAGCTTGCTTTCCAATGCCTTGCACCGGTGAAGCGATCACGGCCATCTATGAAGAGTTGTGTAGAGGTTCTGTGGGAAATCCGCAAGGATTTTACAGATAGATCATCTTCTCATACTCATCCTGGTTCTCACCATTCTGCGAATTTCCCTCAGAGGGATGCCAGGAAGAATAGGCATAAGACATATGGTATTGAACATGGTAAAGGCTATAAATTTGTCTCTGCATAA 1365 0.4147 MKKTPVHSLHQSNQRKKNVGVQDRGAGNDTHRRSVENRTVLTYINSVKNFFSFFLSGKRKFSKEAPQSDDGKNAPKVKGEPSSTDVSSDSSKNSSKWVFSQSSASSGTSSSHLGIGNFTFEEIYKATAKFSALNKIGEGAFGTVYKGRLYDGSLVAVKRAKKDLQNKNLAEFKNEINTLSNIEHRNLVRWRGYLEDGDEKIIVVEYVSNGTLREHLDGIRGNGLEIGERLDIAIDIAHGITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGADDPAATHISTQIKGTAGYIDPDYMRTRHLSEKSDVYSFGVLLVEIVTGRHPVEPKRPLSERVTIKWAMQMLKQGDIVIAMDPRLKRNPASNKAVQKVLKLAFQCLAPVKRSRPSMKSCVEVLWEIRKDFTDRSSSHTHPGSHHSANFPQRDARKNRHKTYGIEHGKGYKFVSA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02392 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Lapu6g02392 454 MobiDBLite consensus disorder prediction 63 94 - -
Lapu6g02392 454 SUPERFAMILY Protein kinase-like (PK-like) 107 406 IPR011009 -
Lapu6g02392 454 MobiDBLite consensus disorder prediction 1 33 - -
Lapu6g02392 454 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 94 206 - -
Lapu6g02392 454 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Lapu6g02392 454 SMART serkin_6 130 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02392 454 MobiDBLite consensus disorder prediction 412 436 - -
Lapu6g02392 454 ProSiteProfiles Protein kinase domain profile. 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02392 454 Pfam Protein tyrosine and serine/threonine kinase 133 403 IPR001245 GO:0004672|GO:0006468
Lapu6g02392 454 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 109 419 - -
Lapu6g02392 454 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 207 417 - -
Lapu6g02392 454 Coils Coil 162 182 - -
Lapu6g02392 454 Gene3D Phosphorylase Kinase; domain 1 89 206 - -
Lapu6g02392 454 Gene3D Transferase(Phosphotransferase) domain 1 207 425 - -
Lapu6g02392 454 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02392 Lapu-Chr6 23671781 23674997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02392 103 403 Trihelix Transcription Factor Family AT1G70460 41.639 2.60e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lapu6g02392 PK_Tyr_Ser-Thr 7.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02392 - - gmx:100819818 701.434