Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02389 ATGTCTATGGGAAAGTGCTCCTTCAAGGACTCTCTTAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACTCTGGCATTGGACTATCCAAGGGACAGAGATGGAGGATGCTTTCAGATGAGGATATCTTACAGTCCAGCTGCTCCTCTTTTTCTATTTCTTGTTCAGTGGACCGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAGGGCATCACGGATTTGGAGGAAAGGAAACAGAGAGAAGTCGCTCTTAGGTACAAACGAAAGAGTGAATTCATGGAGAGAAAACAATCTGAGATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCTAAAGTTGTGCTGCCTGATTGCTGCCACTATATGTGTTTGAAGTGTTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAATCAACTCTGGGGACCTTTGGATTTACACTGACATGAATGATATTGTTGATATTGAGACAATTTCCAGAGAAAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 735 0.4136 MSMGKCSFKDSLKALEADIQYANTLALDYPRDRDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRVLIYVTYGNGKNTMSIYERKASIRQFYSVIFPALLQLEKGITDLEERKQREVALRYKRKSEFMERKQSEIDIEREEECGVCLEVKAKVVLPDCCHYMCLKCYRDWCQRSQSCPFCRDSLKRINSGDLWIYTDMNDIVDIETISRENCKRLFLYIEKLPLIVPDPRYVFYDPFLR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02389 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 195 IPR013083 -
Lapu6g02389 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Lapu6g02389 244 SUPERFAMILY RING/U-box 131 191 - -
Lapu6g02389 244 PANTHER RING FINGER PROTEIN 41, 151 6 236 - -
Lapu6g02389 244 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Lapu6g02389 244 SMART ring_2 148 185 IPR001841 -
Lapu6g02389 244 FunFam RING/U-box superfamily protein 126 195 - -
Lapu6g02389 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02389 Lapu-Chr6 23631667 23635839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02389 113 189 C3H Transcription Factor Family AT5G41350 28.750 4.61e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02389 - K25840 gmx:100808567 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02389 6 23631667 23635839 Lapu6g02389 6 23631667 23635839 ECH