Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02386 ATGACACACCGCACCATGGAGGAGGACTTGAACATCTTGGAGATGAATACTGAGCCTTGTAACAACAGCAATGCTACAAGTGCAAAGACAGCACCACCACACACAGACAACAGCCTCACATGTTCAACTGTGACAAAGAAGTCTTCATTTCTGGTCACCATAGTTCGCTTCCAAATGCTTAAAAGTTTCACAGCCAATTTGAAAGATGTTGTTTTTGGCACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATAGCCTTGGAAGGCCTTGGATTTTTGCTTTGAGCCTGCTTGGACTCACCCCGCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATCGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGTTCTCCCTGCTGGGTTCCATTCTCTCAAACCTTCTATTAGTTCTTGGAAGTTCACTCCTTTGTGGAGGCTTAGCCAACCTTAGGAAGGAGCAAAGATATGACAGAAAACAAGCAGATGTAAACTCACTGGTTTTATTGCTGGGGTTGCTGTGCCATTTGCTGCCCTTAATGTTCAGATATGCCTTAGCAGGAGAATATCCTTCAATAGCCACTAGCACTCTACAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTGGCATATGCCGGATACATCTTCTTTCAATTAAAAACACATCGACAATTTTTTGATGCACAAGAGGAAGATGAAAATGAAGGCGAGGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGTATGACACTTATCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAGCATGCTGGCTCAATCATATTTGCTTTTAAGAACAAGTTGGACATATCATTGGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTTCTTGAAACTGGTTGTCTTGCTTTTACAATTATTGTTACTGCATTCACTTTGCAGGATGGAACATCACACTACATGAAAGGAGTGGTTCTTTTCCTGTGTTACATTATCATTGCTGCATGCTTTTTTGTTCACAAAACTCCACTAATTAATGAAGCATAG 1311 0.4134 MTHRTMEEDLNILEMNTEPCNNSNATSAKTAPPHTDNSLTCSTVTKKSSFLVTIVRFQMLKSFTANLKDVVFGTKLAVLFPAVPLAVVADFYSLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKFSLLGSILSNLLLVLGSSLLCGGLANLRKEQRYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGEYPSIATSTLQLSRASSIVMLLAYAGYIFFQLKTHRQFFDAQEEDENEGEEKAVIGFWSAFTWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYIIIAACFFVHKTPLINEA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02386 436 FunFam Vacuolar cation/proton exchanger 127 271 - -
Lapu6g02386 436 FunFam Vacuolar cation/proton exchanger 272 427 - -
Lapu6g02386 436 Pfam Sodium/calcium exchanger protein 98 255 IPR004837 GO:0016020|GO:0055085
Lapu6g02386 436 Pfam Sodium/calcium exchanger protein 283 424 IPR004837 GO:0016020|GO:0055085
Lapu6g02386 436 Gene3D - 278 427 IPR044880 -
Lapu6g02386 436 Gene3D - 127 277 IPR044880 -
Lapu6g02386 436 NCBIfam calcium/proton exchanger 81 426 IPR004798 GO:0006816|GO:0015369
Lapu6g02386 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 48 430 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lapu6g02386 436 NCBIfam calcium/proton exchanger 61 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02386 Lapu-Chr6 23597638 23601670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02386 16 431 Antiporters AT2G38170 65.485 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02386 K07300 - gmx:100778821 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02386 6 23597638 23601670 Lapu6g02386 6 23597638 23601670 ECH