Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02378 ATGTCCATCCACTATTCCCCGCCCTCGCCGCCCACCCTCCAGTCCATCCGCCGCTCTCTCTCCGATATCTCCTCCTCACCGCCCGACCACCGCCCCTTCGACACCCCCCGCCGCTTCGCCGCCTTCGCTCACCGCCTCTCCCACCTCCTCCTCCTTCCACTTCCTCACTCTACCCCCGTCCACACCGCTCTCAAGGGACTCGCGGCCGAGCTCTCCAAGGCCGCCGAAATCCTCTCCGTCTACAACAACGGCAGCAAGATTCTCGTCCTCGTCGACTGCAAATCCCTTTGCTCCTCCCTCCAAGAACGCACTGTAGCCATTGCCGCCTGGCTTGCACTTCTCGCTTCCGCCCTTCCAGCAGCCGGAGCCGACGGCGCCGACGACGACCTCCGCAAGAAGGTCTCCGACCTCGCCAGAGACATGAAGCTCGCACAGTTCAGAGTCTCGGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGAGATGGGAGAGACAGCAGCAAAGCGGTGCAGAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGTGCTGAGTTTTGTAACCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTGCCTGAGAGAAGAGTATTGGTGTCCTTGGAGAGAATTCTAAGTAACTGGTCTGTGGAGCCGGTCACTGTGACCCCCAATTGGGACTTTGAAGTTGCTGAAGAAGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTCGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCGGCTATTGAGTACTGGTTTGAACGGTGCATACAAGATGGCCGTGATCCAACTTGTCCTGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAGCCTAATATCGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTCGATTATCAAATCAAATCTGCAGTGCAGTATCTGAGCGAGGAACCCTTGTCTGTTGACCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCAACTAGAAGATACATAATCAGAAACGCTGGTGTTGTGCTGTTGATAGTAACTCTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTGGCATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTCGAACGGGGTATCACTAGATTGGCAGTACATAGTCTTATTGGGAGCTCTGCGAAGGAGAGAGAATATGCTACCAAGTTATTACTAGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATTGCATCAGAAAAAGGTGCTTTAGTTCTCCTCTCGAGCATAGCAGGAAATATGGAGTATCCGTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGATGATGGAAAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACATGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTGCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTTGTCGAACTTCTCTCTTATCAAGAAGGAAGGGGACCAAGTCTGCAAGCATTGTACAATTTGTCAGGATTGGAAGGCAATGCAACCATCCTTATTGAGTCTTCGGCCCTTCCATCTCTTATAGAAGTTTTATTTGATAGGCGGGACCCATCTCATGAGCTGAAGTCATTAGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCACTGGGAATTAGCATCTGCTGACAAGAATGGAAACCAAATGCATTCAGAAATGATTGTTTTAAGACTTTTGGGGCTTTTAAACTGTGTGCCCTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATTATCTCCTCAAGCATCAGAGTTAGTGGCAAGTCATATCACGTCTAAGGGTGGTTTTGGAACGATCATGCCATTTCTGGAGCATCCAGAAGTTGAACACAGAGTGTTTGCTTTTAAGCTTACAAGACTTCTATCTGAATGGTTTAGTCAGTACATTGCAAATGAGTTGAGACTTTCAAACAAACTTACTATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATATTTCCCTCTCAGAAGGAGAAATGCAGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTGTGACTCTCAAGAACCAGCTGCGTGTTTCCAATGCAAGGTCTTCTCATACTGCAGCAGGCTTGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGGAACCTTGATCAAGAAACTCTTAATATAATTAGAGAAAATCACCTCATGGCCATTTTCTGTGAGCAGCTGGATTATAGTTCAAAACCAAAGGTAAAACGACTAGCTGCCATTGGATTGAAAAACTTGTCTGAATTTGGAAGATCAGATACTGCTAGGGACTCTAAACTACAATCTTCCAGTGGATTCTGTTCCTCCCTTATGCTTGTGTGTGGGAGAGCCTCTAGTCAACCTTCCACATGCCCCATTCACAACCGTCCGTGCAATGAAGATAGTCAGTTGTGCCTGCTCAAGAGCAACTGTATCAAACCCCTGGTTGATATCCTCAATGACAGTGACACTGATGTTCAGCTAGCTGCAGTGGATGCACTTTCTACTCTAGTACTAGATCACACATCTCGCAGTTTCAAAAGAGTTGTTGAGGAGCTTGAGCATTTGGGTGCAGTTGATGCTCTTACCACTCTTTTTACAGAAGTTAGATCTGAGGAGCTTCGGGAGAAGACAATTTGGATGATAGAAAAGATATTGAGAGTGGAAAATATCAGCAATCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAACACAAGGAAACATGCTCAAGATGCTCTTACCCTCCTAAAGCAGTTATCAGGAGTCAGTGGAAAGACGTCAAGTCAAACTCGAGCTAGGAGATAG 3126 0.4655 MSIHYSPPSPPTLQSIRRSLSDISSSPPDHRPFDTPRRFAAFAHRLSHLLLLPLPHSTPVHTALKGLAAELSKAAEILSVYNNGSKILVLVDCKSLCSSLQERTVAIAAWLALLASALPAAGADGADDDLRKKVSDLARDMKLAQFRVSENEERVWCTLEKEGDGRDSSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKGDPFRSHSVPERRVLVSLERILSNWSVEPVTVTPNWDFEVAEEAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVVDYQIKSAVQYLSEEPLSVDHVERALDHVYKVSEEHPTRRYIIRNAGVVLLIVTLLSNNSKTIGSRLRSKALTTLLGMAKDEESRKIMLERGITRLAVHSLIGSSAKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRMMERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIEMAALVGRMTLTNSCKEQIARQGARVFVELLSYQEGRGPSLQALYNLSGLEGNATILIESSALPSLIEVLFDRRDPSHELKSLAASTIANIVSKPGHWELASADKNGNQMHSEMIVLRLLGLLNCVPSQCQVIVLRILCGITLSPQASELVASHITSKGGFGTIMPFLEHPEVEHRVFAFKLTRLLSEWFSQYIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILANISLSEGEMQTLLGGNFVEWTAVTLKNQLRVSNARSSHTAAGLQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGLKNLSEFGRSDTARDSKLQSSSGFCSSLMLVCGRASSQPSTCPIHNRPCNEDSQLCLLKSNCIKPLVDILNDSDTDVQLAAVDALSTLVLDHTSRSFKRVVEELEHLGAVDALTTLFTEVRSEELREKTIWMIEKILRVENISNRYALNHSLVRALVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRARR* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02378 1041 CDD RING-Ubox_PUB 256 311 IPR045210 -
Lapu6g02378 1041 SUPERFAMILY ARM repeat 651 1023 IPR016024 -
Lapu6g02378 1041 ProSiteProfiles U-box domain profile. 251 331 IPR003613 GO:0004842|GO:0016567
Lapu6g02378 1041 Coils Coil 483 503 - -
Lapu6g02378 1041 SMART arm_5 364 408 IPR000225 GO:0005515
Lapu6g02378 1041 SMART arm_5 810 851 IPR000225 GO:0005515
Lapu6g02378 1041 SMART arm_5 895 935 IPR000225 GO:0005515
Lapu6g02378 1041 SMART arm_5 942 983 IPR000225 GO:0005515
Lapu6g02378 1041 SMART arm_5 572 615 IPR000225 GO:0005515
Lapu6g02378 1041 SMART arm_5 534 571 IPR000225 GO:0005515
Lapu6g02378 1041 SUPERFAMILY ARM repeat 336 769 IPR016024 -
Lapu6g02378 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 327 IPR013083 -
Lapu6g02378 1041 Gene3D - 328 853 IPR011989 -
Lapu6g02378 1041 Pfam Armadillo/beta-catenin-like repeat 900 933 IPR000225 GO:0005515
Lapu6g02378 1041 Gene3D - 893 1037 IPR011989 -
Lapu6g02378 1041 Pfam U-box domain 256 325 IPR003613 GO:0004842|GO:0016567
Lapu6g02378 1041 SMART Ubox_2 255 324 IPR003613 GO:0004842|GO:0016567
Lapu6g02378 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 47 1031 - -
Lapu6g02378 1041 SUPERFAMILY RING/U-box 252 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02378 Lapu-Chr6 23463921 23471400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02378 253 1031 U-box Gene Family AT1G76390 30.100 6.63e-82 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02378 - - gmx:102659945 1746.87