Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02373 ATGGATATTGGGTTTCAAGGATCGTGGCACCCTGGGACAGTTATCCAGTGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATGACACGGGGGTGTATTATCTTGAGGAGGTAGTGATTGTTTCAAAAGCTTTGGACGGTGATATTGAATCTGCAAACTGCTATGCACGCGGGTCCATCAGGCCATTGCCTCCTTTGGTTGAGTTTGATAGGGGGGGCCTTGTATTTGGTTTATGTGTTGATGTGAACTATGAGGAAGCTTGGTGGGAAGGTGTTATATTTGACCATCGTGATGGAATGGACAAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGCGGGTTGGAATTCATCAGTTACGAATTACTCAGGACTGGGATGAAATTACCGAGGAGTGGACCCGACGAGGGAACTGGGTGTTTCTTGATTTGATTGAGGAGCAAAAGATGAAATTGTTTGTCACAGTTTCGGCCAAGCAGATTTGGTATGATATACGCATGAAAAAGGAATTTGAAACGATTGGAGACTGGACATGTAATTTGAAGTACTTATGGACAGAGTTGATAAAGGAGGTAGTTAATCACTACTTATCTCTAACGGTAAAGGAAATTATCTCTGTCCTAAACCTTCCTGGGAGTTTATTAAATGAAACATCAGAGCAGAAATTTGTTGAAGCTATGGCTAATGTTGACTTGAGCATGATCTGGCATGATAAGGAAATTGTTGAGCAGAAAGAACCTGTTCCTCCTATTAAAGAGACCTTATCTGAGTTTCAAAATGAAATCAGCCACTGTGGTGGTAGTCTGTTTGAAGAAAGTAAAGAAGATAGATCCTCAAGTCCTTTAAGGTCCAGTTTTTGGAAACCTGTGAAGTTGTCTGACGTTGAATTATGCCCTGATGCTATTAGGGAATATCCGCTTGCTTCCAAACGTGAAGTCAGGGCATTTTGGATGGAAAAATTACAAAAGCATCTTGCATGTCTTGGATGGAAAATTGAGTGGTCAAATAGATTAAATGTTAAACGTTACAGGTATATTGCCCCCAATACGCAGAGCCGAAAGTATTACCTTTCACTCATTGAAGTTTGTAAAGCTATGAAACAGGACCCCGACAAGAACTCCTTGCATCTCCAAAATGACCAGAACATAATGCATCCTACTGTTGATTGTCATCTTTCATATGTGGCTCCTAATCCAGCTGAAAATGTTCAGAGTCTAGATTTCTTTCCTCCGGCTGAAAATATTCAGAATCCAGATATCTTTCCTCTATCTGTGTCATCTCCTCCAGTTGAAGATGAAGTTGAAGCTGTACCAGAATATTGTCCTTGGGCTGTCGTGCAGTATTATCGCTTGTATAATATATCCAATAAGAGCCGGGCCGATAAAAAAAGATGGATACTAAAGGCAAAGAACCATCTGTTAGCAGAGGGATGGATTTTTGACTATCCACCTCCATTTAATAAGAAAAGAGGAATAATATACATGTCTCCACAAAATCGGAAATTCCCAACACTCCATGCAGCATGTAAATTTTGTATTGAAGAAAGTATTCCTAATTGGGACGTTGAATGGCAGGCGATGGATAAAGATGCATCTAGTAGTAAATCTACTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAATATATCCAAGAGCCAAATCAATGGATTGCCTCTACAGGTGCTAAGATCAAATAAGAGGGTGCAAAACTTGTCTAGCCCTGGTCATTTACATCATAAGCCTCTAAATATTCCGTCTTGTTTGATAGACAACAACATTATCTTACCAAGGTCTAAGGTTTATTATCAGACAAAAGGCAGGCACCGTGCAGTCCGAACTTTGGCTGAGGGGAAAATGACTCGTGATGGAATCAAGTGTAACTGTTGCTTCACAATGTACAGTTTTGCTGGATTTGAAAAACATGCTAGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTCTTGGATGATGGTAAGTCACTCTTGGACTGCCAGATGCAAATGATGCAAGGTCACAAGACAAGGGAAGCTAGTGGGAAATCATTACGTGATCTGTCTCTACCTGAGAATGACTACATTTGTTCAGTTTGCCACTATGGTGGTGAGCTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGTCGTGTCTTGGTTTGGAGGATATCCCTGAAGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGTGAAAGGAAAATTGATGGAGATGAGGTTGAACACTTCCTTTCTTGCATACAGTGTGAACATAAATATCATGTTAGGTGTCTGAAAAATGGAGCTGCAGATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATACGAGGGGCTTCATAAATTATTAGGAGAGCCAGTTCCAGTGGCTAACAATCTAACTTGGACATTGGTGAAACTTATCAACCCTGACAGTTGTTCCCTCGGTAATATTGAAAGTGACTTATTGGCAGAAAGTTACTGCAAACTCAATCTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCTTGACTTGCAGAGATCTCTTGGAAGATGCTATATTCAGCAGATGGTCAGAGCTTAACCGAATAAATTTTCAGGGTTTCTATACTGTGCTACTTGAGAAAAATGAAGAACTGGTTAGCGTGGCAACTGTCAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTTTAATAAATGAGCTCGAAATGAAGCTCATGCAATTAGGTGTGGAGAGGCTGGTTTTGCCGGCTGTTCCTAGTGTGCTAGAGACATGGACCGGCTCTTTTGGCTTTGAAAAGATGACTAATTATGAGAGATCTCAATTTTTGGACTATACTTTCCTAGATTTTGAGGGTACCATTATGTGCCAAAAGTTGATGAATATTGCATCTTCAGATTCAGTTATGTTAATAGAGTCCGAACGTTGTTGTGTTAACAATAGTAAGTCTAGTCCAGTATGTGAAGTACACCAAGTAGAACATATTGACAAAGAGTAA 3105 0.4035 MDIGFQGSWHPGTVIQCEDLQRRVRYNNILDDTGVYYLEEVVIVSKALDGDIESANCYARGSIRPLPPLVEFDRGGLVFGLCVDVNYEEAWWEGVIFDHRDGMDKRSVFFPDLGDEMRVGIHQLRITQDWDEITEEWTRRGNWVFLDLIEEQKMKLFVTVSAKQIWYDIRMKKEFETIGDWTCNLKYLWTELIKEVVNHYLSLTVKEIISVLNLPGSLLNETSEQKFVEAMANVDLSMIWHDKEIVEQKEPVPPIKETLSEFQNEISHCGGSLFEESKEDRSSSPLRSSFWKPVKLSDVELCPDAIREYPLASKREVRAFWMEKLQKHLACLGWKIEWSNRLNVKRYRYIAPNTQSRKYYLSLIEVCKAMKQDPDKNSLHLQNDQNIMHPTVDCHLSYVAPNPAENVQSLDFFPPAENIQNPDIFPLSVSSPPVEDEVEAVPEYCPWAVVQYYRLYNISNKSRADKKRWILKAKNHLLAEGWIFDYPPPFNKKRGIIYMSPQNRKFPTLHAACKFCIEESIPNWDVEWQAMDKDASSSKSTTNQKKKNKRDLKANISKSQINGLPLQVLRSNKRVQNLSSPGHLHHKPLNIPSCLIDNNIILPRSKVYYQTKGRHRAVRTLAEGKMTRDGIKCNCCFTMYSFAGFEKHASGSSTCRPSASIFLDDGKSLLDCQMQMMQGHKTREASGKSLRDLSLPENDYICSVCHYGGELILCDKCPSSFHKSCLGLEDIPEGDWFCPSCRCGICGERKIDGDEVEHFLSCIQCEHKYHVRCLKNGAADTSRYNGNWFCGKDCEKIYEGLHKLLGEPVPVANNLTWTLVKLINPDSCSLGNIESDLLAESYCKLNLALSLMHECFEPLKESLTCRDLLEDAIFSRWSELNRINFQGFYTVLLEKNEELVSVATVRVHGKKVAEIPLVGTRLQYRRHGMCRILINELEMKLMQLGVERLVLPAVPSVLETWTGSFGFEKMTNYERSQFLDYTFLDFEGTIMCQKLMNIASSDSVMLIESERCCVNNSKSSPVCEVHQVEHIDKE* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02373 1034 CDD NAT_SF 891 951 - -
Lapu6g02373 1034 SMART PHD_3 743 794 IPR001965 -
Lapu6g02373 1034 SMART PHD_3 701 742 IPR001965 -
Lapu6g02373 1034 SUPERFAMILY FYVE/PHD zinc finger 681 742 IPR011011 -
Lapu6g02373 1034 Pfam PHD-finger 701 743 IPR019787 -
Lapu6g02373 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 797 IPR013083 -
Lapu6g02373 1034 Gene3D - 847 974 - -
Lapu6g02373 1034 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 850 977 IPR016181 -
Lapu6g02373 1034 MobiDBLite consensus disorder prediction 532 556 - -
Lapu6g02373 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 743 IPR013083 -
Lapu6g02373 1034 SMART ring_2 702 741 IPR001841 -
Lapu6g02373 1034 SMART ring_2 743 793 IPR001841 -
Lapu6g02373 1034 Pfam Agenet domain 4 68 IPR008395 -
Lapu6g02373 1034 PANTHER PHD FINGER PROTEIN 12 455 1021 IPR042163 GO:0003714|GO:0045892
Lapu6g02373 1034 SMART agenet_At_2 75 132 IPR014002 -
Lapu6g02373 1034 Pfam Tify domain binding domain 624 676 IPR032308 -
Lapu6g02373 1034 ProSiteProfiles Zinc finger PHD-type profile. 699 744 IPR019787 -
Lapu6g02373 1034 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 835 985 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02373 Lapu-Chr6 23404267 23412003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02373 567 938 PHD Transcription Factor Family AT5G58610 51.316 8.12e-117 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu6g02373 Agenet 1.7e-08 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02373 - - gmx:100814680 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02373 6 23404267 23412003 Lapu6g02373 6 23404267 23412003 ECH
Lapu6g02373 6 23404267 23412003 Lapu6g02373 6 23404267 23412003 PCT