Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02370 ATGTCTTGTTCCGTGGCAGTTCCCACCTCCCCTGTGTTCTCTCTCTTCAACAACAACAACACCAATAACAATAACTCTTCTTCAGAACCTCTCATGCTTTCTCTTCCCATTCCCTCTACGACGCCCTCTTGCTCCTCTCCACCTTCCTCTCCTCTTTTGAAGCGAAGGAGACCCGCAAAACTCGACATTCCGGTTGCTTCCCTCGCTTTCGCGCTCTCCACGGCGCCGCCACCGTCTCCGGCGAGGGACGCGGTCGTCGAGGTCGACGGAAGTGAGTTTTCTGTGTTCTGCAAACGAGGAAGGAGGCAACACATGGAGGACCGTTACTCCGCTGCCGTTGATCTTCGCGGTGAACCCAAACAGGCTTTCTTCGGCATATTTGATGGGCATGGGGGCACAAAGGCTTCGGAATTTGCTGCACATAACTTGGAGAAGAATGTGTTGGATGAAGTGGTTAGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAGCATGGTTACCTCAATACAGATTCCGAATTCTTGAAGGAGGATCTTCATGGCGGCTCTTGCTGTGTGACAGCATTGATAAGGAATGGTAACCTTGTTGTGTCTAATGTTGGGGATTGTCGTGCTGTGATTAGCAGAGGGGGTGTGGCAGAAGCCCTCACTTCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTGTGGAGGATCCAAGGGTCATTGGCTGTTTCTAGAGGAATTGGAGATAGGAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCTGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTCATCCTTTTTGTGCAGGGAACAATAGACAACAACCTTTGCTGGCTTGTAAGAAGCTCGTGGATTTATCTGTGTCGCGAGGCTCTGTGGATGATATAAGTGTTATGATTATCAAGTTGCAAAACTATGTTTGA 1044 0.4847 MSCSVAVPTSPVFSLFNNNNTNNNNSSSEPLMLSLPIPSTTPSCSSPPSSPLLKRRRPAKLDIPVASLAFALSTAPPPSPARDAVVEVDGSEFSVFCKRGRRQHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDESDIEEAVKHGYLNTDSEFLKEDLHGGSCCVTALIRNGNLVVSNVGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPLHDLLILASDGLWEKVSNQEAVDIAHPFCAGNNRQQPLLACKKLVDLSVSRGSVDDISVMIIKLQNYV* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02370 347 SMART PP2C_SIG_2 103 343 IPR001932 -
Lapu6g02370 347 Gene3D - 90 346 IPR036457 -
Lapu6g02370 347 SMART PP2C_4 78 341 IPR001932 -
Lapu6g02370 347 Pfam Protein phosphatase 2C 93 336 IPR001932 -
Lapu6g02370 347 PANTHER PROTEIN PHOSPHATASE 2C 40 342 IPR015655 GO:0004722|GO:0006470
Lapu6g02370 347 FunFam probable protein phosphatase 2C 25 85 346 - -
Lapu6g02370 347 SUPERFAMILY PP2C-like 92 345 IPR036457 -
Lapu6g02370 347 MobiDBLite consensus disorder prediction 21 55 - -
Lapu6g02370 347 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Lapu6g02370 347 MobiDBLite consensus disorder prediction 21 50 - -
Lapu6g02370 347 ProSiteProfiles PPM-type phosphatase domain profile. 92 343 IPR001932 -
Lapu6g02370 347 CDD PP2Cc 93 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02370 Lapu-Chr6 23329918 23332209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02370 1 343 PP2C-type Phosphatase Gene Family AT1G07160 58.621 1.22e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02370 K17506 - gmx:100813073 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02370 6 23329918 23332209 Lapu6g02370 6 23329918 23332209 ECH
Lapu6g02370 6 23329918 23332209 Lapu6g02370 6 23329918 23332209 PCT