Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02365 ATGCCAACCCAACCTGACTCACCCAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTCCACCTCTATGCCAAATGGTTCCTTGCTCAGGCACAGGCTCAGGCACACGCCCGCCGTCGCCGCCGCCGCCGACGAACGACGGTGACAGTATCCGACGTCCTTGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACTCCTCACCCCTCTCAACGAAAGGTCTTGATTCTTCCACCGTTAGAGCAATTCCTCTCTTCATCTATGAGCATGACAATAAGGCCAAGGAAGATGAAGAACTTGAATGTGTGATCTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCTAATTGTCCTATTTGTAGAGCCCCCATTGTAGTAAATGTTGTTGAGAGTGATTCTTCTCAGGTTGTCTCTTCTAGAGATCATAGTGATGAATATGGTGGTTCTGATTTTGAAATCGTGGTTGATGCTACTTCTGATGAGACTAGAGAGAGAGAGCACGGGAATGGCAATGGCAATGGAGGAGCAAGAACAAGTGTTTCTGTATCAGAAACTTCTTCCTCGTTTTTTGGGTGCTCTTTGGAGAGAATGCTCGGCAAGGTTTTCCCATCGACTAATTAA 768 0.4753 MPTQPDSPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSSPLSTKGLDSSTVRAIPLFIYEHDNKAKEDEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVNVVESDSSQVVSSRDHSDEYGGSDFEIVVDATSDETREREHGNGNGNGGARTSVSVSETSSSFFGCSLERMLGKVFPSTN* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02365 255 MobiDBLite consensus disorder prediction 208 229 - -
Lapu6g02365 255 FunFam RING-H2 finger protein ATL1 87 175 - -
Lapu6g02365 255 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Lapu6g02365 255 SUPERFAMILY RING/U-box 118 176 - -
Lapu6g02365 255 CDD RING-H2_EL5-like 127 170 - -
Lapu6g02365 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 175 IPR013083 -
Lapu6g02365 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 192 - -
Lapu6g02365 255 SMART ring_2 128 169 IPR001841 -
Lapu6g02365 255 Pfam Ring finger domain 127 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02365 Lapu-Chr6 23275620 23276500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02365 19 222 Rapid Response to Elicitors AT3G16720 31.863 4.81e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02365 - - pvu:PHAVU_006G070000g 406.757