Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02364 ATGGTACCATCTTCAACTAGCATGGTGAAGGAGGAATGTTGCATATGTTTGGGTCTTTTCCAAGGTAATGAAAAGTTGAAGGTGCTGATTGAATGTCAACATGTGTTTCATTCTCAGTGCTTAGACTTATGGCTCACTGCACACCCTAGTTGCCCTCTCTGCAGGGCTTCACTCCATGTCAGAGAAAATCCAAAGAAATAA 201 0.4229 MVPSSTSMVKEECCICLGLFQGNEKLKVLIECQHVFHSQCLDLWLTAHPSCPLCRASLHVRENPKK* 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02364 66 Pfam Ring finger domain 12 55 IPR001841 -
Lapu6g02364 66 ProSiteProfiles Zinc finger RING-type profile. 13 55 IPR001841 -
Lapu6g02364 66 SMART ring_2 13 54 IPR001841 -
Lapu6g02364 66 SUPERFAMILY RING/U-box 10 61 - -
Lapu6g02364 66 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 58 IPR044675 -
Lapu6g02364 66 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 64 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02364 Lapu-Chr6 23264917 23265279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02364 12 58 Rapid Response to Elicitors AT3G05200 55.319 9.55e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02364 - - gmx:102667569 121.709