Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02339 ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTGCTGAGACGCCGTTGCTCCCAGGAATGCATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTCTTTGGTGCTAGCAATATCAGCAAAATGCTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCAGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGATCCTGTGTATGGATGTGTTGGAGCCATATCATACCTACAAAACCAGGTTTCACAGCTGCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATTCTATGCATCCAGATGCAGCAACAAGAACCTACCTTAACCACACAAGAAGACCAAGATCACAAATCACTGCTCCTATCTGTAAACAATAACTATGAAATCCTTCCTCAGTATCTTAACTTTCCTTCATCCTCTTCCTCCTCTTCAAATGTCTTCCAAGACCCTCATCAGCCTCTTAAGAGAGAGTCTTTTTGGACTTGA 516 0.4477 MGGTSPCASCKLLRRRCSQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQQEPTLTTQEDQDHKSLLLSVNNNYEILPQYLNFPSSSSSSSNVFQDPHQPLKRESFWT* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02339 171 Coils Coil 85 105 - -
Lapu6g02339 171 MobiDBLite consensus disorder prediction 151 171 - -
Lapu6g02339 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Lapu6g02339 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Lapu6g02339 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02339 Lapu-Chr6 22919753 22921224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02339 3 171 AS2 family AT2G30130 66.316 8.64e-80 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu6g02339 LOB 8.6e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02339 6 22919753 22921224 Lapu6g02339 6 22919753 22921224 ECH
Lapu6g02339 6 22919753 22921224 Lapu6g02339 6 22919753 22921224 PCT