Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02326 ATGACCACTTCTTTCTCTGACCTTCTCTCTTCTCCCACCGACCGCAACCTAGGAGGCTCCGAAAGACCTCAAGAGGTGTCGGATCAAACAGGTTCTGGTGTGCCGAAATTCAAGTCCACACCACCTCCATCTCTCCCTCTTTCTCACCCTCAAAATCATCATCTTCCACCCATTTCCCCTTCTTACTTTAACATCCCTCATGGGTTAAGCCTTGCTGAACTTCTTGACTCCCCAGTTCTTCTTCACTCTTCTAGCGTTTTGCCATCTCCAACCACTGGATCATTTGCTGGTCAAGGCTTCAATTGGAAGAACAGTTATGGGGAAAGTCAGCACCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCCTTCCAAACACAAACACAGATTCCTCTTACATCTTCAACTGGATTTCAATCTTCAACTGGCATAGTTCAAACGGCATGGAGTTTCCCGGAAACTACTAAACAAGATGGTTTCTCTTCAAGTATGAGTATGAGTATGGTGAAAACTGAAACCTCTTCTGCGATGCAGAGTTTCAACTCTGAGAATAACCGCAACAGTGCTGGTTTTCAATCAGATTACAACAATTACCAGCCACAAGTTCAGACCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGACAAAAGCAAGTTAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGTACATACCCCAATTGTCCAACAAAGAAAAAGGTTGAGAGGTCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGCAGTCATAATCATCCCAAGCCTCAGGCTAGCAAGAAGAACTCGTTGTCTGCCTCATCACTTGCAATTCCTCATTCAAATAGTGTCAACAATGAAATAACACAAGCCACTCATCAAATGGATTCGGTCGCAACTCCAGAAAACTCATCAATATCAATGGAAGATGATGATTTTGGTCAGAGCAAATCAGGAGGAGATGAGTTTGATAATGATGAACCCAATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCTGCTGTTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTCGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACCGATGGAGAAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATTCCCAGGATGTCCAGTGAGGAAGCACGTTGAGAGAGCCTCACATGACCTAAGAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGACGTGCCTGCAGCACGTGGCAGTGGCAGCAACTCTATCAGCAGATCAGTGCCTATAAACACTACCACAAACAGCACCACTAGTGCAGCCACTTCTACATACATTAACAATTCTCATCAGAATCTCAGACCAGCAGCGCCAGAAAGGACACAACACTTCAACCCCAATATGCAGCAGGGCTCAGGAAGTTTTGGATTCTCAGGGTTTGGAAATCCATTAATGGGGTCTTACATGAACCAACAATCTGACAATGTGTTCACCTCTAGAGCCAAGGAGGAGCCAGGAGATGACTCGTTTCTTGACTCTTTGCTGTGTTAA 1605 0.438 MTTSFSDLLSSPTDRNLGGSERPQEVSDQTGSGVPKFKSTPPPSLPLSHPQNHHLPPISPSYFNIPHGLSLAELLDSPVLLHSSSVLPSPTTGSFAGQGFNWKNSYGESQHHVKEEDKSFSSFSFQTQTQIPLTSSTGFQSSTGIVQTAWSFPETTKQDGFSSSMSMSMVKTETSSAMQSFNSENNRNSAGFQSDYNNYQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQASKKNSLSASSLAIPHSNSVNNEITQATHQMDSVATPENSSISMEDDDFGQSKSGGDEFDNDEPNAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSISRSVPINTTTNSTTSAATSTYINNSHQNLRPAAPERTQHFNPNMQQGSGSFGFSGFGNPLMGSYMNQQSDNVFTSRAKEEPGDDSFLDSLLC* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02326 534 MobiDBLite consensus disorder prediction 1 37 - -
Lapu6g02326 534 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 462 IPR044810 GO:0003700
Lapu6g02326 534 SMART WRKY_cls 372 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 SMART WRKY_cls 210 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 ProSiteProfiles WRKY domain profile. 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 MobiDBLite consensus disorder prediction 300 334 - -
Lapu6g02326 534 FunFam WRKY transcription factor 199 270 - -
Lapu6g02326 534 SUPERFAMILY WRKY DNA-binding domain 364 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 Pfam WRKY DNA -binding domain 373 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 Pfam WRKY DNA -binding domain 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 FunFam WRKY transcription factor 33 359 425 - -
Lapu6g02326 534 MobiDBLite consensus disorder prediction 320 334 - -
Lapu6g02326 534 Gene3D WRKY domain 359 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 Gene3D WRKY domain 197 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 MobiDBLite consensus disorder prediction 1 53 - -
Lapu6g02326 534 MobiDBLite consensus disorder prediction 300 318 - -
Lapu6g02326 534 MobiDBLite consensus disorder prediction 428 456 - -
Lapu6g02326 534 MobiDBLite consensus disorder prediction 434 456 - -
Lapu6g02326 534 SUPERFAMILY WRKY DNA-binding domain 209 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 ProSiteProfiles WRKY domain profile. 367 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02326 534 MobiDBLite consensus disorder prediction 261 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02326 Lapu-Chr6 22798859 22802330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02326 1 533 WRKY Transcription Factor Family AT2G38470 43.860 1.04e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g02326 WRKY 2.5e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02326 6 22798859 22802330 Lapu6g02326 6 22798859 22802330 ECH
Lapu6g02326 6 22798859 22802330 Lapu10g01299 10 17727438 17730782 PCT