Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02311 ATGGAGATATCATTGTTAAAAGTGATTGTAAATGGCATATCCTCGTTCTTGCATTTATCAATTTCTGGGAACATGAACTCTGAACCTGTCTCAAAGTATTACCAGAAGGCTGAGGAGATACTTAAGTTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCCGTTAATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGCTTCTCAGCATTGTCTCCCTGATGGATTGAGTTCTGAAGATTTACAGCAATGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCACTTATTAAGGAAGTTATTGCAGTACAACTGGAATATGTAGGACCCAGTCCAGAGGTCTTGACAAAAATTGCTGATAGACTGGGCCTAATTTCTAATCAGGATGTTCTTATCGAGGCTGTGGCTCTTGAAAGGTTGAAGGAGAATGCTGAACAATCTGAAAAGACTGAGGAGGCTGAATACATTGATCAAATGATTGCTGTCATAACACGGATGCTTGAGCGTCTTGTTATGCTTAAGCAATCTCAGAGTAGCAGCCCAGTTTCAATACCTGCTGATTTTTGTTGTCCCCTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCAAACAATGTGCAACTAGTTGATCCCGCAAAATCCACAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAGTCACGTGTTTTTTCTCACCCCAGGAACAACCAGCCATCCTCACCTGAGTCAGCACATTCTTTTAGTTCACCAGGTAATAACATAACTTCTGGTGGCATTCAGCTAGAGGAATCATCACCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATATATGGATCTTGCAAGAATATCTCCTGCTGATGACAGGTCTGCTAGTTCAGATGAAAGCACTGTGGATTCAGCTAGCCAACCATCATTGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCGCTGAACTATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTTCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCCTCTGTCAACGAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAATTAAATACAGGTCCAGAAACTGCTGGTACTACTGCCATGCCATCAACACATAGAGAAACTGAGTTCCCAGCCCGATTGTTAGAGATGAGGCCTCGAAGTCAAGCCATATGGAGGCGGCCAGCAGAGAGGCTTGTTCCTAGGATAACATCTCCTGCTATTGAAACAAGAGTTGATCTTTCTGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTGGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCGAAGCACAATATGGATAATCGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCGGCCGATACAGCGATCCAAGAAAATGCTGTTACTGCGCTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCACTGGTAGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCGAACCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGAAGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCCAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGCTTACATAGTACCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCGAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2505 0.4315 MEISLLKVIVNGISSFLHLSISGNMNSEPVSKYYQKAEEILKLLKPIIDEIVNSELASDEVLNKILEEIGLAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKASQHCLPDGLSSEDLQQCSQKLKLLGHEETSSLIKEVIAVQLEYVGPSPEVLTKIADRLGLISNQDVLIEAVALERLKENAEQSEKTEEAEYIDQMIAVITRMLERLVMLKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPAKSTNLNPPSVLHGYMESGTTRESRVFSHPRNNQPSSPESAHSFSSPGNNITSGGIQLEESSPPLHPRSTSEGSLSGIINGQYMDLARISPADDRSASSDESTVDSASQPSLSPSRRESSSAFSAELSQTHIRAVSDSSALSTSNFPQETQDDDNNAPLSTSPGHSRDASGELNTGPETAGTTAMPSTHRETEFPARLLEMRPRSQAIWRRPAERLVPRITSPAIETRVDLSGIEAQVRNLVEGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADTAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCLHSTKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02311 834 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Lapu6g02311 834 FunFam RING-type E3 ubiquitin transferase 534 829 - -
Lapu6g02311 834 MobiDBLite consensus disorder prediction 334 389 - -
Lapu6g02311 834 SUPERFAMILY ARM repeat 551 823 IPR016024 -
Lapu6g02311 834 MobiDBLite consensus disorder prediction 404 512 - -
Lapu6g02311 834 Pfam Armadillo/beta-catenin-like repeat 664 701 IPR000225 GO:0005515
Lapu6g02311 834 Pfam Armadillo/beta-catenin-like repeat 621 660 IPR000225 GO:0005515
Lapu6g02311 834 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515
Lapu6g02311 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Lapu6g02311 834 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Lapu6g02311 834 Coils Coil 179 206 - -
Lapu6g02311 834 CDD RING-Ubox_PUB 237 289 IPR045210 -
Lapu6g02311 834 MobiDBLite consensus disorder prediction 414 502 - -
Lapu6g02311 834 Gene3D - 535 829 IPR011989 -
Lapu6g02311 834 SMART arm_5 662 702 IPR000225 GO:0005515
Lapu6g02311 834 SMART arm_5 580 620 IPR000225 GO:0005515
Lapu6g02311 834 SMART arm_5 743 783 IPR000225 GO:0005515
Lapu6g02311 834 SMART arm_5 621 661 IPR000225 GO:0005515
Lapu6g02311 834 SMART arm_5 534 578 IPR000225 GO:0005515
Lapu6g02311 834 SMART arm_5 703 742 IPR000225 GO:0005515
Lapu6g02311 834 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Lapu6g02311 834 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Lapu6g02311 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 755 IPR000225 GO:0005515
Lapu6g02311 834 SUPERFAMILY RING/U-box 224 313 - -
Lapu6g02311 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 715 IPR000225 GO:0005515
Lapu6g02311 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 315 IPR013083 -
Lapu6g02311 834 PANTHER U BOX DOMAIN-CONTAINING 29 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02311 Lapu-Chr6 22669474 22679311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02311 196 834 U-box Gene Family AT2G23140 62.844 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02311 - - gmx:100811250 1370.91