Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02309 ATGGAGAGTAAACCAAATATGTTAATGCAAAGATATGAGTTAGGAAGATTACTCGGCCAGGGAACCTTTGGAAAGGTTTACTATGCTAGAAGTGCAGCAACTAACCAGAGTGTGGCTATTAAAATGATTGACAAAGATAAGATTATGAAAACCGGACAAGTTGAACAAATCAGGCGTGAAATATCTGTTATGAGATTGGCTAGACACCCCAATATTATACAGCTTTTTGAGGTTATGGCTAACAAGAGTAAGATTTACTTTGTTTTGGAATATGCTAAAGGTGGAGAGCTCTTCAACAAGGTGGCCAAAGGAAAACTCAAGGAAGATGTGGCACACAAGTATTTCAAACAGCTAATTAATGCTGTGGATTTTTGTCACAGTAGAGGTGTGTACCACCGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGGAATCTAAAGGTCTCTGATTTCGGCTTAAGTGCTCTTGTTGAATCCAAAAGGCAAGATGGTTTACTCCATACTCCTTGTGGCACACCTGCTTATGTTGCTCCTGAAGTCATTAAAAGGAAGGGATATGATGGTATAAAAGCTGATATTTGGTCTTGTGGAATAGTTCTGTTTGTCTTGTTGGCAGGTTATCTCCCTTTTCATGACCCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGCCCTAATTGGTTCCCACCTGATGTATGCAAGCTATTGGGCATGATGTTGGATCCAAATCCTGAAACTAGGATCCCCATATCTAATATTAGGGAACATTGTTGGTTTAAGAAAGAACCTAATGTCAAAAACAAAAGACCTGTAGTGGAAAACAACACTGTCTCTTCTTCAGGTACTGTTCTTCCTGATCAAAATGATTGTGATGGTCTAGCAGCAGAAGCAAATGAACCCTTAAGTATAAATGCCTTTGATATTATCTCCCGTTCTGCGGGTTTTGATCTTTCTAGATTCTTTGATGACAGTTTTCAGAAAAAGGAAGCAAGATTTAGTTCAAGGTTACCTGCAAATGTCATCATCTCCAAGCTGGAAGACATTGCTAAGCAACTGAGGATGAAAATAAAGAAAAAAGCTGCGGGTTTGTTGAAATTAGAGGGCTTGGAGGAAGGTAGGAAGGGGGTTTTAACCATTGATGCAGAGATCTTTCAAGTTACGCCTTGTTTCCATTTGGTGGAGGTGAAAAAATCAAATGGAGATACGTTGGAGTATCAGAAAATATTGAAAGAGGATATCAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGACCAACAACTGCAATCACAATCGTCAGAGGAGCAGCAACAGACAGATGACCAGCAACAACAACAACCACAGCCGCAGTCATAA 1383 0.3948 MESKPNMLMQRYELGRLLGQGTFGKVYYARSAATNQSVAIKMIDKDKIMKTGQVEQIRREISVMRLARHPNIIQLFEVMANKSKIYFVLEYAKGGELFNKVAKGKLKEDVAHKYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGIKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKISKAELKCPNWFPPDVCKLLGMMLDPNPETRIPISNIREHCWFKKEPNVKNKRPVVENNTVSSSGTVLPDQNDCDGLAAEANEPLSINAFDIISRSAGFDLSRFFDDSFQKKEARFSSRLPANVIISKLEDIAKQLRMKIKKKAAGLLKLEGLEEGRKGVLTIDAEIFQVTPCFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSQSSEEQQQTDDQQQQQPQPQS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02309 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lapu6g02309 460 Pfam NAF domain 307 365 IPR004041 GO:0007165
Lapu6g02309 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 424 - -
Lapu6g02309 460 CDD CIPK_C 311 425 - -
Lapu6g02309 460 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02309 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02309 460 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Lapu6g02309 460 Gene3D Kinase associated domain 1, KA1 307 430 - -
Lapu6g02309 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lapu6g02309 460 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Lapu6g02309 460 MobiDBLite consensus disorder prediction 439 460 - -
Lapu6g02309 460 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Lapu6g02309 460 FunFam Non-specific serine/threonine protein kinase 5 305 - -
Lapu6g02309 460 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Lapu6g02309 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02309 460 FunFam Non-specific serine/threonine protein kinase 305 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02309 Lapu-Chr6 22651554 22654397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02309 1 435 CBL-interacting serine-threonine protein kinases AT5G58380 66.887 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu6g02309 Pkinase 3.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02309 - K07198 gmx:100790905 766.533