Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02298 ATGGCAAGAAAGAAGTTGGATTTGACATACATTACCAATGACTCAAAGAGGAAGACAACCTTAAAGAAAAGAAAGCATGGTTTGATAAAGAAAATGAATGAAATTAGCACCCTTTGTGGGATTGAAGCATGTGCCATAATCTATACTCCAAATGATCCTCAGGCAGAGGTTTGGCCATCTGAGTCAGAAGTCCGAAGGGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAAAGCAGAAAGATGTTGAATCAGGAGAGCTTGTTGAAGCAAATAATCATCAAAGGCCAACAACAGTTGACAAGACAAAGGAATGAGAACAGGAAGAAAGAAATGACTCATCTCATGTTTCAGTACTTGAGTCTTGGCAGGGTTTTTGACAATCCTAGTTTGATAGATTTGAATGATCTCTCATGGCTGATTGATCAGAACCTCAATGAAATAAAAAAGAAGATGGCTATGATCCAAATCCAACAAGTGGCACCTGTGACTGAAAATGGAGGAGAACATGGATGCATGCATCATGTCCAAGGTCTAGAGAGCAACATAGACACCATTTAG 564 0.3954 MARKKLDLTYITNDSKRKTTLKKRKHGLIKKMNEISTLCGIEACAIIYTPNDPQAEVWPSESEVRRVLSKFMEMSEQKQSRKMLNQESLLKQIIIKGQQQLTRQRNENRKKEMTHLMFQYLSLGRVFDNPSLIDLNDLSWLIDQNLNEIKKKMAMIQIQQVAPVTENGGEHGCMHHVQGLESNIDTI* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02298 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu6g02298 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu6g02298 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu6g02298 187 PANTHER MADS BOX PROTEIN 3 153 - -
Lapu6g02298 187 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lapu6g02298 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu6g02298 187 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Lapu6g02298 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lapu6g02298 187 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu6g02298 187 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lapu6g02298 187 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02298 Lapu-Chr6 22566185 22566846 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02298 1 157 Type I MADS-box Gene Family AT5G48670 49.682 5.73e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02298 SRF-TF 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02298 - - gmx:100797590 300.827