Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02296 ATGGCTAGAAAGAAGGTCGACCTTACTTTCATAACCAAAACCTCTAAGAGGAAGGCAACGTTCAAGAAAAGGAAAAATGGTTTGATAAAAAAAATTGGTGAAATCAGCATCCTTTGTGGGATTCAAGCATGTGCTATAATCTATACACCTGATGAGCCTGATCAGCCAGAGGTTTGGCCATCTGAGGAGGGAGTTGAAAGTGCTATTTCCAGGTTCAGGAGTGTGTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCTTGAGGCAAAGAATTGTGAAAGTCCAAGAACAGCTGAAGAAAGTGAGGAATGAGAATAGGAAGAAAGAGATTGGCCATCTCATTTCTCAATACATCACTATTGGGAACAACCTTGAGACTGCCAACATCATTGATCTGAATGATATCTCATTCTTGGCTGATCAATGCTTGGAGGACATCACAAAGAAAATCACTGTGCGCAAAGCCCAAATGCTGACACCAATTACTGAAAATGGAGGAGAAGCCGTGACTCAAGGAGAACAAGCACAAGTGAATAATCATGTCCAAGGGCATTACACCCATGTCGATGCCATGCAGAGTCTGAATTGGTCTACTGATATAATCAATGCTGCTGCTGCCAATGAGATGTTAGCATTGGAAGATGTTAATGTCCAAAGTGGTTGGCTTAACCAATATATCCCTTGA 696 0.4167 MARKKVDLTFITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYTPDEPDQPEVWPSEEGVESAISRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKVRNENRKKEIGHLISQYITIGNNLETANIIDLNDISFLADQCLEDITKKITVRKAQMLTPITENGGEAVTQGEQAQVNNHVQGHYTHVDAMQSLNWSTDIINAAAANEMLALEDVNVQSGWLNQYIP* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02296 231 Gene3D - 14 117 IPR036879 GO:0003677|GO:0046983
Lapu6g02296 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lapu6g02296 231 Coils Coil 88 115 - -
Lapu6g02296 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu6g02296 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu6g02296 231 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Lapu6g02296 231 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lapu6g02296 231 PANTHER MADS BOX PROTEIN 3 127 - -
Lapu6g02296 231 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Lapu6g02296 231 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu6g02296 231 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02296 Lapu-Chr6 22542418 22543259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02296 1 177 Type I MADS-box Gene Family AT5G48670 46.629 4.48e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02296 SRF-TF 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02296 - - vra:106752448 391.349