Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02294 ATGACTAGAGCCAAGATTGAACTTGCTTATATAACCGATCCTGGAAAGAGGAAGGCAACTTTCAAGAAAAGGAAAAATGGTTTGCTGAAAAAGATCAATGAAATCACTGTCCTTTGTGGGATTGATGCATGTGCTGTAGTCTATAGCCCTGATGTGCCTAATAAACCAGAGGTTTGGCCATCTGAATCAGGAGTCAAAAGTGTGATTTCCAAGTTCAATGGTGTATCTGAGGCTGAGAAAAGTAAGAAAATGTTTTGCCAAGAGAGCTTTATAAGACAGAGAATTGACAAAGGCCAAGAACAACTGAAGAAACTGAAGAATGAAAATAGGAAGAGAGAGATTAACCTTCTCATGTGTGAATACCTCACTCATGGGGACAACAACCTTGACAATAACAACATGAATTATCTGGAGGGTTTCTCATTCTTTACTGATCAAAACTTGGATGAAATTAGAAACAAAATCACTATGCGCCAACCCCAAGAAGAGACACCAATGATTGGCAATAGAGGAGAAGCCATGACTCAAGGAGAGCAGGCACATGTAAAACGGCTGGGGACCAATTTTGCCAGAAAAAAATTGAATTAG 588 0.3946 MTRAKIELAYITDPGKRKATFKKRKNGLLKKINEITVLCGIDACAVVYSPDVPNKPEVWPSESGVKSVISKFNGVSEAEKSKKMFCQESFIRQRIDKGQEQLKKLKNENRKREINLLMCEYLTHGDNNLDNNNMNYLEGFSFFTDQNLDEIRNKITMRQPQEETPMIGNRGEAMTQGEQAHVKRLGTNFARKKLN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02294 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu6g02294 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu6g02294 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lapu6g02294 195 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Lapu6g02294 195 Coils Coil 88 115 - -
Lapu6g02294 195 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lapu6g02294 195 Gene3D - 13 141 IPR036879 GO:0003677|GO:0046983
Lapu6g02294 195 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lapu6g02294 195 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Lapu6g02294 195 PANTHER MADS BOX PROTEIN 3 158 - -
Lapu6g02294 195 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02294 Lapu-Chr6 22533209 22533949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02294 5 155 Type I MADS-box Gene Family AT1G65300 44.371 6.17e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02294 SRF-TF 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02294 - - var:108342715 315.849