Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02293 ATGACTGGGAGAAAAGTGAAACTGGCATTCATAGCCAATGATTATGCCAGGAGGGCATCATATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTGAAGAACTCAGCACCCTATGTGGAGTAGAAGCATGTGCTATAGTGTATAGCTCCTTTGATGAAGAGCCTCAGATTTGGCCATCCCAATCAGGTGTCCAGAATGTGGTTGAAAAGTTCAGGACTATTCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAAAGTATTGTGAAGGGTAAAAGGAAGATTAGGAAACTCGAGGAGGAGAATAAGGAGATGGAGATTACCATGTTCATGTTTCAATGCCTTAATACAAGTAGGGTTCAGCCGCAACATAACATGACGTTGGCAGATTTGAATCTTCTTTCATCAGTGATTGAACAGAAGTTGAACGACATCAGCAGCAGGTTGGAATTGACAAATGTTACCGAGACACCGTACCAACTCCAGATACAAACATTTGTAGATACTAATCTCAAACTCTAA 537 0.4115 MTGRKVKLAFIANDYARRASYRRRKKSMLKKIEELSTLCGVEACAIVYSSFDEEPQIWPSQSGVQNVVEKFRTIPEWKKHKMGNQESVMEKSIVKGKRKIRKLEEENKEMEITMFMFQCLNTSRVQPQHNMTLADLNLLSSVIEQKLNDISSRLELTNVTETPYQLQIQTFVDTNLKL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02293 178 Coils Coil 93 113 - -
Lapu6g02293 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Lapu6g02293 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu6g02293 178 PANTHER MADS BOX PROTEIN 5 129 - -
Lapu6g02293 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lapu6g02293 178 FunFam agamous-like MADS-box protein AGL80 13 96 - -
Lapu6g02293 178 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lapu6g02293 178 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02293 Lapu-Chr6 22521253 22521789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02293 1 156 Type I MADS-box Gene Family AT5G48670 47.134 2.53e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02293 SRF-TF 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02293 - - pvu:PHAVU_006G077900g 316.62