Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02292 ATGTCCCGAAGAAAGGTGGAACTCACATTCATAGCTAATAATTCAGATAGGAAGGCATCATATACCAAAAGGAAGAAGTCATTGCTGAAGAAGACGGAGGAAATCAGCACCCTTTGTGGTGTTGAAGCATGCACAATAGTTTATGGCCCTTATGGTCCAGAGCCAGATGTTTGGACTTCTGAATCGGGTGTTCAAAACGTGGTGGAGAAGTTCAGGAATACATGTGAGCATAACAAGAAGATGGCGACTCAAGAGAGTTTTCTTTCAGAAAGAATCGCCAAGGGTAGAGAGAAGATGAAGAAACATGTAAGGAGCAACCAGGAGAAGGAGATGGCCATGTTTATGTTTCAGTGCCTTAAGGATGGGCGGGTTGAGCTTCACAATAACATGAGCACAGATGATTTGACTGTTCTTTCATCAGTGATTGAAAGCAAGCTGAGGGACATTAATAAAAGGATGGAGACTTTGAATGTTACTGAGATGCCACCAAACCAACCCCAGATGGAACCAACAGCACTACCAGTAGCAGCACCTGAAGACATCATACCACCAAATCATGGCGATGGGACAGATATGAATGCTGATGACCCCTTGCAAAGCCAGTGGTTTATGGAGTTTCTTAATGATAACGGTGATGAGGAGACAATAAAAAGAATTCAAACAACTCTTTTTACTTCTCTTTTTCTTTCTCCCTTTTCTTTTCACCACCATGACATGGAAAAGGTTGAAACTCTCACTGAAGAAACTTTTGAAAGAGAATAA 762 0.4173 MSRRKVELTFIANNSDRKASYTKRKKSLLKKTEEISTLCGVEACTIVYGPYGPEPDVWTSESGVQNVVEKFRNTCEHNKKMATQESFLSERIAKGREKMKKHVRSNQEKEMAMFMFQCLKDGRVELHNNMSTDDLTVLSSVIESKLRDINKRMETLNVTEMPPNQPQMEPTALPVAAPEDIIPPNHGDGTDMNADDPLQSQWFMEFLNDNGDEETIKRIQTTLFTSLFLSPFSFHHHDMEKVETLTEETFERE* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02292 253 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lapu6g02292 253 FunFam Agamous-like MADS-box protein AGL80 13 96 - -
Lapu6g02292 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Lapu6g02292 253 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Lapu6g02292 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu6g02292 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu6g02292 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu6g02292 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu6g02292 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lapu6g02292 253 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lapu6g02292 253 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02292 Lapu-Chr6 22511175 22521789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02292 1 185 Type I MADS-box Gene Family AT5G48670 45.789 8.82e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02292 SRF-TF 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02292 - - vun:114188526 380.563