Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02291 ATGACCAGGAGAAAGGTGAAACTTGCATTCATAGAAAATGATTCTGCAAGGAAGATAACATACAAAAAAAGGAAGAAGGGACTGCTGAAGAAAATTGAGGAACTCAGCACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATGGTCCCGATGATCATGAGCCAGAGGTTTGGCCATCCCATTGTGAGGTCCAAAGGGTGGTGGGAAGGTTCAGGAACATGCCTGCAGTGGAGAAAATGAAGAAGATGGTGAACCAAGAGAGTTTCATAGGACAAAGGATCCAAAAGGGTAACGAACAAATGATGAAACTAATGAAGGACAATGCAGAGAAGGAGTTGACCTTGTTCATGTTTCAATGCCTTACTGAAGGGAGGGTTTTGCCAGATGAAAATAACATGACCTTGGCTGACTTGAATGCTCTTTCCTCAGTGATTGAACAGAATCTGGAGGACATTCGTAAAAGGTTGCAAACTCTGAATGTGAATCAGATAGAACCAAATCAAAAAGCCCAGACGCAAACATCAGCATTCCAACCACAGTTGAAAACAGCATCATACCTACACCATTTGCAAACACCATCTTACCAACCCCATTTGCAAATGGCACTGATGAGTTCTGGACATGGGTTGGATATGGATGCTAACCCTATGCAAAGGTTGTTGTTTATGGACTTGCTTAATGGTAATGGAGATGAGACAATAGTGCCTCCGTTTGGTGATCCTAATCTCCAACTCCAAAATGAGTTTTGGTCAAACCTACGCTCGTTACCTTGA 774 0.4251 MTRRKVKLAFIENDSARKITYKKRKKGLLKKIEELSTLCGIDACAIVYGPDDHEPEVWPSHCEVQRVVGRFRNMPAVEKMKKMVNQESFIGQRIQKGNEQMMKLMKDNAEKELTLFMFQCLTEGRVLPDENNMTLADLNALSSVIEQNLEDIRKRLQTLNVNQIEPNQKAQTQTSAFQPQLKTASYLHHLQTPSYQPHLQMALMSSGHGLDMDANPMQRLLFMDLLNGNGDETIVPPFGDPNLQLQNEFWSNLRSLP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02291 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu6g02291 257 PANTHER MADS BOX PROTEIN 3 159 - -
Lapu6g02291 257 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lapu6g02291 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu6g02291 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu6g02291 257 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu6g02291 257 Coils Coil 135 162 - -
Lapu6g02291 257 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lapu6g02291 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lapu6g02291 257 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lapu6g02291 257 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02291 Lapu-Chr6 22503289 22504062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02291 1 176 Type I MADS-box Gene Family AT5G48670 50.000 1.98e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02291 SRF-TF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02291 - - vra:106752453 371.318