Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02277 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGGGACATCCTTGAGCCATTATCCACATACGAGAATTCAGTTTTCTGCAGCAAATTCCACCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGTATGGTATCTAGATCTTTGTTCGAGCATCTTGACTATGGTGGTATAGGATGTGTTAGCTGCGTAAATACTAGTCAGCTTAGTACGATGAGGAATATTGAAAATCCCAATGGGTCTGTTTCATTGATAAAAAATAATGCAAGTGATCGGCTTTCTTCTCATTCCGAGGGAAGACTGTTTGCAGGTGGTGTTGAGGAAGGAAAACTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCGATGGAATAATGCTCAAAGAGATAGCATCATTTCGCGTCACGGGCACAACAACCAAGAAGCCAAGTGTTCATTCAAGGAAGGAGACATTGGTTTTTCAAATGTGATGAAGCCATCTGTTCAGTCATTAACATTTGCTACGTTAGAAAATAATAGGTCATCATGGGAGATTAAAAATATCCACGGAGGAAATGCACAGCCATCATTGAGTATGTACATGGGAAATGCATCAGGGAACAAATCTGTCCTGCCTTCTGCTGGAGAGGCTGTGGAAGGAAGACTTGAGGGAAAAACATCTCCTCCCTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCCAAACCATTGAAGAGTGGGCTTACCATGAATGTAGAAATAGATAAAGGTACAATTTCTCAATCACGAGTTGCACGGCCACCTGCAGATGGCAGAGGAAAGAACCAGTTACTTCCTCGATACTGGCCCAGGATTACCGATCAAGAGTTGGAGCGATTGTCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGCGCTGAGGCATATTTCCCTTCTATTTCGCAATCTGAGGGTGTTCCTTTGCGGATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTGTTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAGTTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGAAAACTTGTTATGGGTTTCAGAAGGGCGTCAAATTCTACAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAATCATGCCAATCTTCTCCTTTCAATGAAGGGAAATGTGGAACCTCACTTAAATGGACAAACAGAACATATACTTTTGGGTACTGGAACTTCTGGGTTGCTTATAAGTGAAAATAATGAGATGACAAACAAGAGTTCACTACAACAAAAAATTTCGATTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCCAAAAGTAAGAGGTTGCTTATTGACAATGAAGATGCTAGGGAGTTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAGTACGATGAACCCCCAGTTTTTGGAAAAAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCAATTGGACATGTTTCGACAATGTTTGGGATTCAAGAAGATGTGCATGCACTGTACCAGAAGAGCTAAGTTCAGGGGAATTAGAAAATCTTTTGAAAACCAACAAAGATTTTAAGAAGCGACGAAGTGATGAAGACAGCAAGTCAATCCAAGAACACGAGGTATGTGGCTTGGAAGCTCTTGCCAGTGCTGCAGCCCTGGGAGAAAATCTTGTTGACACTGCCGAATCGTCGGCTGGAGCCACCACCAAACATCCAAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATTCAGCCCCCAAGTGGCAAGGGGAGACACAAGCCCACATGCGCATGCAATGTGTGCTTGACCGTCAAGCGCCGGTTCAAAACCCTAATGCAAAGAAAGAAGAAACGGCAATCTGACCGTGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTGCTGAAAGACGAGTCAGATACCAATGAAACATCAAGAGATGATGCAACTCAGTTGGAGAAAGAGATAGGACTGAACATAGGTCAAGCTGAAGTGGGTGAATCCAGTTCTGCTGGACAAATTGATCTGAATTCTCATCCCAACCGTGAAGACATGCAAGTGGATATCACAGGAGTTTTTTTTTGCACAACAACAACCACAACAAACCCTACTACATTAGGGGAATATATGAACCAAAATGGTCCAAGAAGCTATAACAATGAATTGCAGAATGGTGAGCATTCTTCTTTGCTCACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGGAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAACCAAAACCAAAACAATCTTTGTTAA 2742 0.4373 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDILEPLSTYENSVFCSKFHHQQTGWRECNFCNKPIHCGCMVSRSLFEHLDYGGIGCVSCVNTSQLSTMRNIENPNGSVSLIKNNASDRLSSHSEGRLFAGGVEEGKLMQFCKIIEASESSRWNNAQRDSIISRHGHNNQEAKCSFKEGDIGFSNVMKPSVQSLTFATLENNRSSWEIKNIHGGNAQPSLSMYMGNASGNKSVLPSAGEAVEGRLEGKTSPPFHQGQRSRPIFPKPLKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSTDTQDTSTSAQSNSAKGTTSAGTENLPSGSNHANLLLSMKGNVEPHLNGQTEHILLGTGTSGLLISENNEMTNKSSLQQKISILEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPVDALLPANWTCFDNVWDSRRCACTVPEELSSGELENLLKTNKDFKKRRSDEDSKSIQEHEVCGLEALASAAALGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCACNVCLTVKRRFKTLMQRKKKRQSDREAEAAQKDQVLLKDESDTNETSRDDATQLEKEIGLNIGQAEVGESSSAGQIDLNSHPNREDMQVDITGVFFCTTTTTTNPTTLGEYMNQNGPRSYNNELQNGEHSSLLTPQSNGEGQRHFSDLRSFASIMWNQERRDEEDSEPNQNQNNLC* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02277 913 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 862 - -
Lapu6g02277 913 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
Lapu6g02277 913 MobiDBLite consensus disorder prediction 752 790 - -
Lapu6g02277 913 MobiDBLite consensus disorder prediction 439 475 - -
Lapu6g02277 913 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Lapu6g02277 913 Gene3D - 317 444 IPR015300 -
Lapu6g02277 913 Pfam B3 DNA binding domain 339 439 IPR003340 GO:0003677
Lapu6g02277 913 MobiDBLite consensus disorder prediction 756 790 - -
Lapu6g02277 913 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Lapu6g02277 913 SUPERFAMILY DNA-binding pseudobarrel domain 337 439 IPR015300 -
Lapu6g02277 913 MobiDBLite consensus disorder prediction 292 311 - -
Lapu6g02277 913 CDD B3_DNA 337 438 IPR003340 GO:0003677
Lapu6g02277 913 MobiDBLite consensus disorder prediction 844 880 - -
Lapu6g02277 913 Gene3D - 603 658 - -
Lapu6g02277 913 Coils Coil 774 794 - -
Lapu6g02277 913 SMART B3_2 339 440 IPR003340 GO:0003677
Lapu6g02277 913 MobiDBLite consensus disorder prediction 252 279 - -
Lapu6g02277 913 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02277 Lapu-Chr6 22339070 22346783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02277 1 826 B3 DNA Binding Superfamily AT2G30470 47.413 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu6g02277 B3 1.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02277 K09287 - gmx:100789848 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02277 6 22339070 22346783 Lapu6g02277 6 22339070 22346783 ECH
Lapu6g02277 6 22339070 22346783 Lapu6g02277 6 22339070 22346783 PCT