Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02273 ATGTCGTATGTGCCTCCGCACCTCAGAAATGCCAGCTCCACCACTGTCGCCACCGCCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACAACCACCACCAACATAACCACCACCACAAGCTCGCATTCACCTCCAACACCACCACCAACCCCAATTGCTCTCCATCGCTCCCCTCCTTTCACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCGTCGCCGCGGATTTTTGCCTCCCCTGACCCCGTCTTCCCGCAATGGCAACCCTCCGAACGCGCTTCGCGCATGACTCCGGAGCAGATTGAAGAGATCCGTTACCGGCTTAATCTTGATGTTACTGTTGCATCTGATTCTCCTCCTGCACCCGCACCTATAGAATCGTTTACTGATATGTGTTTGCACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAGATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTCGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCTGAACTTAGATCCGGGGTTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTGGATATGGGTTTTGAACCACAAATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACACTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCAGAAAACGAGAAGATTGATCGACTTCTAGATTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCCGAAGCATTGGTAGCTCAAGGATTGTCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAATGAAAGAGAGGCTGCCTTGCACGATTTTCGGAGTGGCTCTACCAACATCTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACGGGGCGTGCAGGATCAACTGGCTTATCTACTTCATTTTACACTGATCGTGACATGTTCCTAGTCGCAAATATAAGGAAGGCAATAGCTGACGCTGAATCTGGGAATACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTGTCCAAACAGTTAGGATTGGGAGCTTCTTCAATTAACATCGAAGATAAATATAAATTCATGATTACTGCCTCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA 1719 0.4683 MSYVPPHLRNASSTTVATAARTPSVTLDNNNNHHQHNHHHKLAFTSNTTTNPNCSPSLPSFHNASRRSSAAPPSPRIFASPDPVFPQWQPSERASRMTPEQIEEIRYRLNLDVTVASDSPPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRSGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLSTSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGASSINIEDKYKFMITASNIKREGAADSAWDD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02273 572 Pfam DEAD/DEAH box helicase 151 321 IPR011545 GO:0003676|GO:0005524
Lapu6g02273 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 495 IPR027417 -
Lapu6g02273 572 Gene3D - 87 338 IPR027417 -
Lapu6g02273 572 Pfam Helicase conserved C-terminal domain 358 475 IPR001650 -
Lapu6g02273 572 CDD DEADc 138 335 - -
Lapu6g02273 572 CDD SF2_C_DEAD 346 484 - -
Lapu6g02273 572 Gene3D - 340 534 IPR027417 -
Lapu6g02273 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 334 IPR014001 -
Lapu6g02273 572 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 102 527 - -
Lapu6g02273 572 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Lapu6g02273 572 SMART ultradead3 146 349 IPR014001 -
Lapu6g02273 572 FunFam probable ATP-dependent RNA helicase DDX17 87 337 - -
Lapu6g02273 572 SMART helicmild6 394 475 IPR001650 -
Lapu6g02273 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 516 IPR001650 -
Lapu6g02273 572 MobiDBLite consensus disorder prediction 44 70 - -
Lapu6g02273 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Lapu6g02273 572 Coils Coil 516 536 - -
Lapu6g02273 572 MobiDBLite consensus disorder prediction 44 97 - -
Lapu6g02273 572 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02273 Lapu-Chr6 22284706 22293299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02273 127 497 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 1.80e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02273 K12823 - gmx:100787545 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02273 6 22284706 22293299 Lapu6g02273 6 22284706 22293299 ECH