Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02271 ATGACTGACACAAACCAACCTTTCATATCCTTGCAACCAACCATGAAGCTCCACCACCCCTTTAACCCCCCAAGCTCAAATTTTGACACCGACCCACCTCGCAAAACCCCCAAAAAACCCCAGCCACCGCATAAGAAGCTCCTCCGGGTCATCCTCACTGACCACGATGCCACCGACTCTGACTCCTCCGGCGACGATGAGGCCCCAAAAAACCCACCAAAACACAAAAAAGTGAAAAGAGAAATCACCCACATCACCATAAACCTTCCCTTTATCCCAGAACCCCCAACAGTAACACCTTTTCCTTCTTTTTCTACTGACCCGACCCGTTTAACCCAACCCGAGAAACCACCCGCCGTCCCTCGCCGCCGGAGCAAGTTCCGAGGTGTCCGGCAGAGACCTTGGGGACGGTGGACCGCCGAGATCCGCGACCCGACCCAAAGAAAACGGGTCTGGCTCGGCACCTTCGACACGGCCACGGAAGCTGCCGTCGTGTACGACGAGGCCGCCGTGAAGCTCAAGGGTCCCAACGCCATCACTAACTTCCCCCTCGCCGTCGCCGGAAAAAGAGAACTCCATGTTTCGCCTCCAGAGGCGGCCTGCTCCGGCGAGGGTTTCTCGTCGCCGACTTCCGTCCTCGCGTACTGCGACGGAGACTCCACGCCGTTCGAAAGTTTCCGTTACAGCGAGGTCGATGCGTTCGGGTTTGACATCGACGCGCCGTTTAGTTTGGCGGAGATTAACTTGGGCGTGCTGAGTCAGCGCTTCGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCAACTTAA 825 0.5733 MTDTNQPFISLQPTMKLHHPFNPPSSNFDTDPPRKTPKKPQPPHKKLLRVILTDHDATDSDSSGDDEAPKNPPKHKKVKREITHITINLPFIPEPPTVTPFPSFSTDPTRLTQPEKPPAVPRRRSKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTATEAAVVYDEAAVKLKGPNAITNFPLAVAGKRELHVSPPEAACSGEGFSSPTSVLAYCDGDSTPFESFRYSEVDAFGFDIDAPFSLAEINLGVLSQRFAKEEFGEFDPDEFLTWPT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02271 274 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Lapu6g02271 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 45 216 - -
Lapu6g02271 274 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Lapu6g02271 274 CDD AP2 125 183 IPR001471 GO:0003700|GO:0006355
Lapu6g02271 274 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Lapu6g02271 274 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Lapu6g02271 274 Pfam AP2 domain 125 175 IPR001471 GO:0003700|GO:0006355
Lapu6g02271 274 MobiDBLite consensus disorder prediction 1 80 - -
Lapu6g02271 274 MobiDBLite consensus disorder prediction 48 74 - -
Lapu6g02271 274 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Lapu6g02271 274 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Lapu6g02271 274 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Lapu6g02271 274 PIRSF PTI6 13 274 IPR017392 GO:0003700
Lapu6g02271 274 MobiDBLite consensus disorder prediction 96 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02271 Lapu-Chr6 22267530 22268932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02271 46 215 AP2-EREBP Transcription Factor Family AT4G27950 42.781 4.47e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g02271 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02271 K13434 - gmx:102660028 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02271 6 22267530 22268932 Lapu6g02271 6 22267530 22268932 ECH
Lapu6g02271 6 22267530 22268932 Lapu6g02271 6 22267530 22268932 PCT