Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02249 ATGGAGACCGTTCCCTCTGTTCTCAAGAAATACTTTGGGTTTTCTGATTTCCGGCTTTATCAGAGAGAAGTTATTACGAAAATTATTGACAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCGTTGATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGCGTCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCTCAGTTCCTACCAGTTTCTGGTCCAACTTATTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTGAGGTCTTGCTTGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACTGAAAAGGTTAGATTTGACATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACGATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGAGGGAAATTTCAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAACAGATATTCAAGTCATTTACAGAAGCGGGCATTGAGGCAGGAATGTACCATGGCCAGATGAATGGAAAAGCTCGAGAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATGTGAAATCAGAAAAACAAAGAAAAGCTGTTATGGAGTCATTGCTTGCTGCTGAACACTATTGTGTGCTGACAACTTGCAGAAGAAAATTCTTGCTTGAATACTTTGGGGAAAAAGTTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCTAAGAAGGAGCGTGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCCAGGGCAGATGGGGCCTTAATATGCCTATTGATGTCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGAGGCTCAGTTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCATCAATTGATTTCTCAAGGTTATTTGAAGGAGACTGTTAGTGACGTATACAGAACTATAAGTGTCAGTCCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCTTTGGTTTTGACTTTGACTGCTGAGATGCTTGGAGAAGATGATGGAAACACCAAAGAAGAATTCAAAACTTTATCATCCACTTCAGAATTAGAAGGTTTTTCAGAGGCTGAGAGAAAGCTTCACCACATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAGGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTGATGGTGTAAATCAGCACCTGGTGACGAAATATGGAGATCATTTTCTTCAAGTTATTCGGAAACTGTCACAAGGATTAAACCTAGCATTGGATGGGGAAGAAAGGGTCCCAATTGCAAGTTTGCCAACTAATGAAGTAACGAAAGTATCTCCACTAATCAACAAATCCAAGAAGTTGACTTCAGCAAAGTTAGAAGCATGGAAAAAGTGGCATGAGGATGGTCTGTCTATTCATGAGATTGCTAACTTACCAGGTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGTTAGATTCAGCAAGATGATAGGACTGACACAAGAGATCATATCAGAAATTCAGGGTGCGATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCATTGCGTAAGTTATCCTTGGAAACAATTCAATCTGGAAGTAAACAGGCCGGGAAAGATGATGAAATTGCTCGGAATGCTTCAAATTTGTCAGACTCTACTTTAGAAACATGTCCTGACAGGCATTGTGAAGATGATATTTATGCCAAAAGTTTGGCTGAACAACGCTACTTAGAAATCGATGAGATACCTTCTTTACTTGTCAACAGTTCTGAGGAACAGGACTTTTCAGTTGCCAGTGAAGGGGAATTCACAAGAAAACGACAAAAGGTCAGTGAAATGAAAGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGATGAAGAACCTTGATGAAGGGGCTACGTTGAGCAATATTTTGGAACACTTCAAGGGATCCAGTGAAGATTCTGTGGTTGAACTGCTAAATTGTCTAGAGTGTGACTTTTTAATATATAGGAAAGGTAACATGTATAGGGTTCTGTAA 2748 0.4014 METVPSVLKKYFGFSDFRLYQREVITKIIDKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGVKAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACSVPTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRFDIISSLKMDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVATGGSTIIYCTTIKDVEQIFKSFTEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAVMESLLAAEHYCVLTTCRRKFLLEYFGEKVSADRCGNCDNCKVSKKERDMSREAFLLMACIHSCQGRWGLNMPIDVLRGSRAKKILEAQFDKLPLHGLGKNYPANWWKSLGHQLISQGYLKETVSDVYRTISVSPKGEQFLASSRPDYQPPLVLTLTAEMLGEDDGNTKEEFKTLSSTSELEGFSEAERKLHHMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANIDGVNQHLVTKYGDHFLQVIRKLSQGLNLALDGEERVPIASLPTNEVTKVSPLINKSKKLTSAKLEAWKKWHEDGLSIHEIANLPGRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSLRKLSLETIQSGSKQAGKDDEIARNASNLSDSTLETCPDRHCEDDIYAKSLAEQRYLEIDEIPSLLVNSSEEQDFSVASEGEFTRKRQKVSEMKEVNSTKLKATESSVVEWMKNLDEGATLSNILEHFKGSSEDSVVELLNCLECDFLIYRKGNMYRVL* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02249 915 FunFam ATP-dependent DNA helicase 200 401 - -
Lapu6g02249 915 SUPERFAMILY HRDC-like 542 617 IPR010997 GO:0000166|GO:0044237
Lapu6g02249 915 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lapu6g02249 915 CDD DEXHc_RecQ 6 199 - -
Lapu6g02249 915 Gene3D HRDC domain 541 622 IPR044876 -
Lapu6g02249 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Lapu6g02249 915 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Lapu6g02249 915 SMART helicmild6 245 326 IPR001650 -
Lapu6g02249 915 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 685 - -
Lapu6g02249 915 Pfam HRDC domain 551 613 IPR002121 GO:0003676
Lapu6g02249 915 Gene3D - 1 198 IPR027417 -
Lapu6g02249 915 FunFam ATP-dependent DNA helicase 539 628 - -
Lapu6g02249 915 SMART ultradead3 13 208 IPR014001 -
Lapu6g02249 915 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Lapu6g02249 915 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 379 IPR001650 -
Lapu6g02249 915 FunFam ATP-dependent DNA helicase 402 526 - -
Lapu6g02249 915 Pfam Helix-turn-helix domain 659 755 IPR029491 -
Lapu6g02249 915 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Lapu6g02249 915 Gene3D - 200 401 IPR027417 -
Lapu6g02249 915 Pfam RecQ zinc-binding 345 400 IPR032284 -
Lapu6g02249 915 FunFam ATP-dependent DNA helicase 1 198 - -
Lapu6g02249 915 Pfam DEAD/DEAH box helicase 20 178 IPR011545 GO:0003676|GO:0005524
Lapu6g02249 915 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Lapu6g02249 915 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Lapu6g02249 915 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lapu6g02249 915 SMART hrdc7 543 623 IPR002121 GO:0003676
Lapu6g02249 915 Gene3D - 402 523 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02249 Lapu-Chr6 22009414 22019860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02249 235 342 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 2.03e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02249 K03654 - gmx:100797777 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02249 6 22009414 22019860 Lapu6g02249 6 22009414 22019860 ECH