Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02238 ATGCCAGAGAGCGAGAAGAAACTTCCGATAATAGAGCCGCCGGAGGACCTCCGCTGCCGCCGGACCGACGGAAATTCATGGCGCTGCCGCCACTGGCGGATTCACAATAAGAGCTACTGCGAGGATCATTACCTTGCTTACCGGAACAAAAAACCTAAGGCTTCCACTTCTTCTGCTTCAGCTTCCGCGCTGAGAGACAATGCGAAGAGGCTTCGGGAACGAGAAGAAGAGACTGTTCCGAAGAAAGCTAAAGACAAGAAGGTGAAACTCGAAGTCGAAGCGGAGCGAGAATCTCCGAAGGAAGAAGTAGCTCTATTACTGGACAGGAAATCCAGGAGCCGAGAGAAGATAAAAGAATCGCTTATTAAATTGGATGGATATTTTGAAATCGAAGAAGAAGAACAGGTCAAAACGACGAGGGCCAAGTCGTCGTTTTCCAAGTTCAACGGCGCGAAGCCAAGAGCGTCTCCCTCTGAATCTAAGATGTGTCATCAGTGCCAAAAAAGTGACAGGACCGTTGTCCGCTGTCAGAACTGTTGCAAACGGTTTTGCGTACCTTGCATTCGGAGATGGTATCCACAAATGTCCAAGGAGGCAATAGAAGAATCTTGTCCATTTTGTCAAGGCAATTGTAACTGCAAGGCATGCTTACGTAGAAAAGATGTAAATGCAGATTCTGGAGTGACTCCAAATGAAGATGAAAAGACTCGACATTTGAAGCATATAATTCGAACATTGTATCCTTTTCTGGAACAATTTAATCATGAGCAGCAGTTGGAAATGGAGATGGAAGCAAAAATTAAAGGGTTATTGGTTTTGGATGTAGAAGTTAACCAAATTGTTTGTTCCAAAGATGAACGTATTTATTGCAACAATTGCAAAACCTCTATTATTGATTTTCATAGGAGCTGCCCAAATTGTTCCTATGATCTTTGCCTTACTTGTTGCCGGGAAATGCGTGGCAATTTCTTACCCGGGGGAGTAGTTGACCAATGCACTGATGTTTCTAATGCTCATTCACATAGTGGAGAGCCTTTAGATCTCCATTTGTGCGAGAAGGAATCATCAGATATTTGTGTGGAATCTAGCTCTGTGAGACCAAAGCATTTGTGGAGGGCCATGAAAAATGGTGCAATCCCCTGTTCACCAAAGGATAATGATGGTTGTGGTTATGAATATCTTGAGCTGAAGTGTATATTTCCTAAAAATATGATTTCAAAGTTAAGAGAAAGAGTGAAAAGATTAATCAAAGTACTTGGACTAGAAGATAAGCCCCCAGATACTTCATGGTGTAATTCCTGCTTCAAATCTTGTGATGAAATTGACTCCATTAATGAGAAGTTGCGAAGAGCTGCCACTCGAGAAGGCTCAATTGACAACTATTTGTATTGTCCTTCAGCTAGTGATGTTAAATGTGGGGATCTGGAACATTTTCAGGGCCATTGGAGCAAGGGAGAACCAGTTATTGTTAGGAATGCTCTTGATTTAACCTCTGGCTTGAGTTGGGAGCCAATGGTAATGTGGCGAGCAATGCGGGAATTGACTTATCATGGTTCCAAACATTTGAATGTGAAAGCAGTTGACTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGATACTCAGAGGGTCGTACTCATCGTAACTCCTGGCCTGAGATGCTCAAGCTCAAAGATTGGCCTCCGTCTAATCAATTTGAGCAGAGGTTACCTCGTCATGGTGTGGAGTTTAATAGTGCTTTACCCTACAAAGAGTATACACATCCTTGCACTGGTTTTCTTAACATGGCCACAAAACTACCAAAAAATTCTTTGAAACCTGACTTGGGGCCAAAGACATATATAGCATATGGCTTTGCTGAAGAGCTTGGACGTGGAGATTCTGTGACCAAGCTTCACTGTGACATGTCAGATGCGGTAAATATTTTGACACATACTGAAGAGGTGACCTTCACTTCTCAACATCTTACCAAAATAGAGATGTTGAAAAAAAAATATGCTGCAAAAGACCTAAGTGAACTTTTTAAGGTTCCGCAGAACAATAATTCTGCTGTGAAGTGCAAATCAACATTAGAAGAAAATATTTCATTGCAGGCAGTAGATGATTTTTCAATTCTTAATGGGTCTTATGAAATGTCAAAAATGGAAAAAGATGGGCCCTGTGGTAAGCATGCATCTGCTAAACCTCCAAATGGTAGCATTGTTTATGAAAATGGTGAGGCTGTGGTTTCTGAGGGAGAACCAAATACCTCTACGTGTGAGGCTGAAGTTCTAGTAGATGTTAAGGCTCCAGTATTGCATGAAAATATCAGCATAAATTCTTCAAGTGCTATAATTATTAATAGTGTGGAAAATCTTATGAAGGGAGATGAGAAAGAGCTCAGTAAGTCTGATGTTAACAAGGTGAGTGTTGAAAGTAAGGAGAAATGGAGTAGCCCAGAAGATATTGAGGTTGGAGAAGGTAAGGAAGATATTGTCTCTTCACTAAAAAGAAGAAATGATGCAGTGCAGGATGACACTGTTAACAAAATAGGAGCAAATACGGGAATTTCGTTGGAAAAGGAAACTGAAGGAAATGTAATTACTGAAAGGGAAATTATATTTAGATCACCGGAAATATATACTGCCAGTACCAAGTTTCAAACTGGAAAAATGGATTCAAAGGAGGAAAATACTGTAACAGATGAGGCACTGCAGCGGGATGCAGGATGTATTAGTCAACAACCTGCGGACTCTGGAAATATGCACACTGGACAAGAATTTACCAAGGGAGGTGCTGTCTGGGATATTTTTCGGAGGCAAGATGTACACAAGCTTGAAGAGTACCTTAGGAAGCATTGTAGGGAATTCAGGCATCTCCATTGTTCTCAAGTGGAGGAGGTTTTTCACCCCATTCATGATCAAGTTTTTTATCTAAATTCTCATCATAAAAGGAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTACACAAAAGCTTGGTGAGGCTGTTTTTATACCTGCTGGGTGTCCACATCAAGTTAGAAACTTAAAGTCGTGCATAAAGGTTGCTCTAGATTTTGTCTCTCCTGAAAATATTCAAGAGTGTATTCGTCTGACAGAGGAGTTTCGTACTCTTCCCTCAAGCCATAAAGCAAAGGAAGACAAACTTGGGGTGAAGAAAATGTGTCTCTATGCATTAAGCAAGGCGGCAGAGGATTTGGAGCAGCTGGAAGTATATGAGTAG 3246 0.4125 MPESEKKLPIIEPPEDLRCRRTDGNSWRCRHWRIHNKSYCEDHYLAYRNKKPKASTSSASASALRDNAKRLREREEETVPKKAKDKKVKLEVEAERESPKEEVALLLDRKSRSREKIKESLIKLDGYFEIEEEEQVKTTRAKSSFSKFNGAKPRASPSESKMCHQCQKSDRTVVRCQNCCKRFCVPCIRRWYPQMSKEAIEESCPFCQGNCNCKACLRRKDVNADSGVTPNEDEKTRHLKHIIRTLYPFLEQFNHEQQLEMEMEAKIKGLLVLDVEVNQIVCSKDERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCREMRGNFLPGGVVDQCTDVSNAHSHSGEPLDLHLCEKESSDICVESSSVRPKHLWRAMKNGAIPCSPKDNDGCGYEYLELKCIFPKNMISKLRERVKRLIKVLGLEDKPPDTSWCNSCFKSCDEIDSINEKLRRAATREGSIDNYLYCPSASDVKCGDLEHFQGHWSKGEPVIVRNALDLTSGLSWEPMVMWRAMRELTYHGSKHLNVKAVDCLDWCEVEINIHQFFKGYSEGRTHRNSWPEMLKLKDWPPSNQFEQRLPRHGVEFNSALPYKEYTHPCTGFLNMATKLPKNSLKPDLGPKTYIAYGFAEELGRGDSVTKLHCDMSDAVNILTHTEEVTFTSQHLTKIEMLKKKYAAKDLSELFKVPQNNNSAVKCKSTLEENISLQAVDDFSILNGSYEMSKMEKDGPCGKHASAKPPNGSIVYENGEAVVSEGEPNTSTCEAEVLVDVKAPVLHENISINSSSAIIINSVENLMKGDEKELSKSDVNKVSVESKEKWSSPEDIEVGEGKEDIVSSLKRRNDAVQDDTVNKIGANTGISLEKETEGNVITEREIIFRSPEIYTASTKFQTGKMDSKEENTVTDEALQRDAGCISQQPADSGNMHTGQEFTKGGAVWDIFRRQDVHKLEEYLRKHCREFRHLHCSQVEEVFHPIHDQVFYLNSHHKRKLKEEFGVEPWTFTQKLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTEEFRTLPSSHKAKEDKLGVKKMCLYALSKAAEDLEQLEVYE* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02238 1081 Pfam JmjC domain, hydroxylase 925 1027 IPR003347 -
Lapu6g02238 1081 Pfam WRC 14 53 IPR014977 -
Lapu6g02238 1081 MobiDBLite consensus disorder prediction 51 85 - -
Lapu6g02238 1081 SUPERFAMILY Clavaminate synthase-like 469 1066 - -
Lapu6g02238 1081 ProSiteProfiles Zinc finger RING-type profile. 163 208 IPR001841 -
Lapu6g02238 1081 MobiDBLite consensus disorder prediction 66 85 - -
Lapu6g02238 1081 ProSiteProfiles WRC domain profile. 13 57 IPR014977 -
Lapu6g02238 1081 SMART cupin_9 575 1044 IPR003347 -
Lapu6g02238 1081 CDD cupin_RmlC-like 967 1028 - -
Lapu6g02238 1081 Gene3D Cupin 877 1053 - -
Lapu6g02238 1081 Gene3D Cupin 462 701 - -
Lapu6g02238 1081 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 53 1078 IPR045109 GO:0032454|GO:0033169
Lapu6g02238 1081 ProSiteProfiles JmjC domain profile. 594 1044 IPR003347 -
Lapu6g02238 1081 FunFam Transcription factor jumonji (JmjC) domain-containing protein 873 1053 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02238 Lapu-Chr6 21831205 21851044 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu6g02238 JmjC 4.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02238 K15601 - gmx:100808936 1613.2