Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02232 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTCGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACAAACAGAGAAATTGATGGGCACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTACACAATGTCACAATGCATGCAGATGTTGAATCGGATGAAGTGTATGCTCAAATGACATTGCAGCCACTGACTCCGCAAGAGCAGAAAGACACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACGGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCGCAGCAGCCACCAGCACAGGAACTGATTGCCAGGGATCTCCATGACGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGTGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACAGTAATGCCATCATCTGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCGACCAATAGCTGTTTTACCGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACGCGTATCTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATGTACGGTGGCTGAATTCGCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGATAGACAACCGCGAGTGTCTCTGTGGGAAATTGAACCATTAACAACATTCCCTATGTATCCATCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGGAAGTAATGGGCTGATGTGGCTAAGGGGTGGACCTTTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAATCTTGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAGCAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCAGCAGCAATCAATTCAACAATCTGTGTCTTCTAGTATGCTGCAGCCACAAGCGCATGTGTTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATTCTTATCAAGACTCGCTCTTAATTCCAAGCGATCAGCTTCGTCAGAGACAACACTCTGGCATTCCTTCACCGTCCTATTCAAAACCAGATTTCTTGGATTCAAGCATGAAGTTCCCTGCTTCAGTTTCCCCCGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGAAATCTCCTGAATTTATCAAGGAGTGATCCGTCCTTGCTGACTGAACAGTTACCTCAACAACAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACAATGTAACTCAGATGCCCAAAATTCGACACTCTTTGGTGTCAATATTGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGTACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTATGTTTGGTTGCATGCAAGATTCCTCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCAGTTGGACGCTCACTTGACATATCTCGGTTCAGCAGCTATCATGAACTGCGTGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGTGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTGGAATCCCTTGCTCTAGGTTCTGGACAAAGGCTAAATGGCACTGGTGCTGAGTCCCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGACTACTGA 2529 0.4591 MKLSTSGLGQQGLEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVESDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDVRWLNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEGSNGLMWLRGGPLDQGLNSLNFQGAGMLPWMQQRLDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQQQQSIQQSVSSSMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSYQDSLLIPSDQLRQRQHSGIPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSGNLLNLSRSDPSLLTEQLPQQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPQCNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSMFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLDY* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02232 842 MobiDBLite consensus disorder prediction 821 842 - -
Lapu6g02232 842 MobiDBLite consensus disorder prediction 541 558 - -
Lapu6g02232 842 SUPERFAMILY CAD & PB1 domains 711 790 - -
Lapu6g02232 842 FunFam Auxin response factor 711 805 - -
Lapu6g02232 842 FunFam Auxin response factor 126 230 - -
Lapu6g02232 842 Gene3D - 126 229 IPR015300 -
Lapu6g02232 842 SMART B3_2 128 230 IPR003340 GO:0003677
Lapu6g02232 842 MobiDBLite consensus disorder prediction 469 493 - -
Lapu6g02232 842 Gene3D - 712 805 - -
Lapu6g02232 842 FunFam Auxin response factor 292 363 - -
Lapu6g02232 842 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Lapu6g02232 842 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Lapu6g02232 842 ProSiteProfiles PB1 domain profile. 716 800 IPR000270 GO:0005515
Lapu6g02232 842 CDD B3_DNA 127 228 IPR003340 GO:0003677
Lapu6g02232 842 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lapu6g02232 842 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu6g02232 842 Gene3D - 292 363 - -
Lapu6g02232 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 805 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu6g02232 842 MobiDBLite consensus disorder prediction 541 560 - -
Lapu6g02232 842 Pfam AUX/IAA family 712 800 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02232 Lapu-Chr6 21801317 21808888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02232 98 808 B3 DNA Binding Superfamily AT5G37020 67.452 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu6g02232 AUX_IAA 2.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02232 - - gmx:100784373 1558.12