Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02230 ATGGTGCTGCAACTGCATCTCAAACTCCTACCTTTAACTTTGTTCATGTTATGGAGCCTTGAGGGTGTCCTAGGAGACCCTCAGATTCGTTTGCTGAACAAAGGTTGCAGCCAATACAACGCCACGGATTTGTCCAATTTCAACCAAAATCTAAACGCAACTTTGGATGAACTTAGAGTTCAAGTTAGCAACCAAAGCAAACACTTTGCCACTGCTGAAGAAGCTAGAGGACAAGACCCTGTCTATGCCATGTTCCAGTGCAGGAACTACCTCTCCACCACTGACTGCGCCGCCTGCTTCGCCGCCGCCGCCGCCCAAATCCGCAACTGCTCCGCCGGAGCCAACGGTGCCCGTGTCATCTACGATGGTTGCTTCCTTAGGTATGAGAGCAATGGCTTCTTTGACCAGACCACTATGGCTGGCAACAGTATGATTTGTGGAAATCAGTCAGCAGTAGGAGCCACTGATTTTAACACAACTGCACAGCAAGTGCTAAAGGATCTGCAAATTGCAACCCCCAAAATCACTGGTTTCTTTGCAGCTACCAAGACACAACTGGCTGGTGGTGCAATCTATGCCATTGCTCAATGTGCTGAAACTGTCTCAGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATACAACAACATACAGATTTGTTTACCCAATACAGAAGGCAGAGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACAGCCTTTTTTGCTGATAACCAGACCATTGATATCACACCCTTCTTGCAACAAGGGGGTTCAAACAAGAAGGCAGCCATTATTGGCGGGGTTGTTGGAGGTGTAGGTCTTGTTGTGATCCTCCTTGCACTATTTGCCTTGCTTAGACGGTACAAGAAACCCAAGAAGGTTCGAAGAGGTAACATATTGGGAGCAACAGAATTGAAAGGTCCAGTTTCCTTCAGGTATAAGGATTTGAAGGCTGCAACAAACAATTTCAGTGATGAAAATAAGCTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGTACTTTGAAAAATGGGAAAATAGTTGCAGTGAAGAAATTAATTTTAGGTCAATCCGGTAAGATCGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGCAACGTTCATCACAAAAATCTAGTTCGACTCCTTGGATGTTGCAGTAAGGGCCAAGAGAGAATCCTTGTATATGAGTACATGGCAAACAAAAGCCTGGATAGATTCTTATTTGGTGAAGAAAAGGATTCTCTCAGCTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCTTATCTACATGAGGATTTCCACGTTTGCATCATACATAGGGATATAAAGACTAGCAATATCCTCTTGGATGATGAGATGCAACCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGGGGACCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCTGATGCCTACAGCTTTGGTGTTGTAGTCCTAGAAATAATAAGTGGCCAGAAGAATAGTGAATTGAGGGCAGATGCTAACGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAGGCATGCATTTGGAGTTGGTTGACAAGACACTGGATCCTGAAGAGTATGAGGAAGAAGAAGTGAAGAAAGTCATAGAAATTGCTTTGCTTTGCATTCAAGCATCAGCTGCTGCAAGGCCAACAATGTCTGAAGTAGTAGCCTCACTCAAAATCAAGAATTCAATGGGGCAAACTAGGCCTTCTATGCCTGTATTTGTTGAATCTAACTTGAGGACTAGGGCAGCTGACACCTCTACCTCGACTGGTTCCTTTACATCTAATGCTACTGCTTCTATTTCAATGCTCTCAGCACGATGA 1938 0.4386 MVLQLHLKLLPLTLFMLWSLEGVLGDPQIRLLNKGCSQYNATDLSNFNQNLNATLDELRVQVSNQSKHFATAEEARGQDPVYAMFQCRNYLSTTDCAACFAAAAAQIRNCSAGANGARVIYDGCFLRYESNGFFDQTTMAGNSMICGNQSAVGATDFNTTAQQVLKDLQIATPKITGFFAATKTQLAGGAIYAIAQCAETVSESGCLDCLTVGYNNIQICLPNTEGRAFDAGCFMRYSETAFFADNQTIDITPFLQQGGSNKKAAIIGGVVGGVGLVVILLALFALLRRYKKPKKVRRGNILGATELKGPVSFRYKDLKAATNNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSGKIDEQFESEVKLISNVHHKNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEEKDSLSWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPGDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVVLEIISGQKNSELRADANGEFLLQRAWKLYEEGMHLELVDKTLDPEEYEEEEVKKVIEIALLCIQASAAARPTMSEVVASLKIKNSMGQTRPSMPVFVESNLRTRAADTSTSTGSFTSNATASISMLSAR* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02230 645 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
Lapu6g02230 645 Coils Coil 48 68 - -
Lapu6g02230 645 SUPERFAMILY Protein kinase-like (PK-like) 309 613 IPR011009 -
Lapu6g02230 645 Pfam Salt stress response/antifungal 36 130 IPR002902 -
Lapu6g02230 645 Pfam Salt stress response/antifungal 152 239 IPR002902 -
Lapu6g02230 645 FunFam Cysteine-rich receptor-like protein kinase 2 402 604 - -
Lapu6g02230 645 Gene3D Transferase(Phosphotransferase) domain 1 402 611 - -
Lapu6g02230 645 CDD STKc_IRAK 331 597 - -
Lapu6g02230 645 Gene3D Phosphorylase Kinase; domain 1 290 401 - -
Lapu6g02230 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Lapu6g02230 645 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Lapu6g02230 645 SMART serkin_6 325 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02230 645 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Lapu6g02230 645 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 625 - -
Lapu6g02230 645 FunFam Cysteine-rich receptor-like protein kinase 2 290 401 - -
Lapu6g02230 645 ProSiteProfiles Gnk2-homologous domain profile. 139 242 IPR002902 -
Lapu6g02230 645 FunFam Cysteine-rich receptor-like protein kinase 2 141 242 - -
Lapu6g02230 645 ProSiteProfiles Protein kinase domain profile. 325 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02230 645 Gene3D - 140 242 IPR038408 -
Lapu6g02230 645 Gene3D - 28 133 IPR038408 -
Lapu6g02230 645 Pfam Protein kinase domain 326 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02230 Lapu-Chr6 21777760 21787371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02230 5 645 Receptor kinase-like Gene Family AT1G70520 36.769 9.98e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu6g02230 Pkinase 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02230 - - pvu:PHAVU_006G084400g 1097.42