Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02228 ATGGAGCTCCAAACTACAACACCAAACATCGAAGGGTTTTATGCAGCTACTAAGACACATGTGGCAGCTGGTGGTAGTGCAATTTATGCTGTTGCACAGTCTGTTGAAACTGCAACCGAGGCTAAATGTCTGAGTTGCATGCAAGTTGGATACAGTAATTTACAAAGTTGTCTTCCCAACACAAAGGGTAGAGCATATGATGCTGGCTGTTTCATGGGATACTCCACCGCACCCTTCTTTCCTGATAACCAAACCATTGATATCACACCCTACTTAAAACGAGGAGGTTCAAGAAAGAAGTGGGCCATTGTAGGTGGTGTTGTTGGAGGTGGAGGTCTACTTTTCATTATCCTTGCATGGTTTGCCTTGCGAAGATCCAGAAAACCTAAGAGGTTTCCAAGAGGTGATATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTATTTACAAATATGCCGACTCGAAAGCAGCAACACAAAATTTTAGTAACGACAATAAACTTGGAGAAGGAGGATTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAATTGTTGCAGTCAGGAAATTAGTGTTAGGGAAATCAAGCAAGATGGAGGATGATTTTAAAAGTGAAGTGAAGTTCACAAGCAATGCTCATCATCGAAATCTGGTTAGACTTCTTGGTTGCTGCATTATAGGAGAAGAAAGAATCCTGGTTTATGAATACATGGCCAACAGTAGTCTTGACAGATTTTTATTTGGTGACAGAGGTCCTCTAAATTGGAAACAACGGTATGATATAATCTTGGGCACAGCAAGAGGATTAGCATATCTACATGAGGAGTTCCACGTGTCCATCATACACAGAGATATCAAGACTGCTAATATCCTTCTGGATGATGATCTTCAGCCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGAGGATCGTTCTCATCTTAGCACAAGATTTGCAGGAACATCGTTAGTCAGAACAATTTGCATTCACTTGAATTTCTTGAAATTCATCTGGGAAAAATTTGTGAGGGGATATACAGCACCTGAATATGCAATCCATGGTCAATTATCAGAGAAGGCTGATATCTACAGCTATGGTATTGTAGTCCTAGAAATCGTAAGTGGCCAAAAGAGCACAAATGTGAAAGAAGATGAGGATGGTCGTGAATACCTTCTTCAACTAAATTCTATTCTCATTGTTGCCCTGTCATCCTTCACATTTTCTCCACCTATCTATCCCCAATATTAG 1257 0.4065 MELQTTTPNIEGFYAATKTHVAAGGSAIYAVAQSVETATEAKCLSCMQVGYSNLQSCLPNTKGRAYDAGCFMGYSTAPFFPDNQTIDITPYLKRGGSRKKWAIVGGVVGGGGLLFIILAWFALRRSRKPKRFPRGDILGATELKGPVIYKYADSKAATQNFSNDNKLGEGGFGDVYKGTLKNGKIVAVRKLVLGKSSKMEDDFKSEVKFTSNAHHRNLVRLLGCCIIGEERILVYEYMANSSLDRFLFGDRGPLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDDLQPKIADFGLARLLPEDRSHLSTRFAGTSLVRTICIHLNFLKFIWEKFVRGYTAPEYAIHGQLSEKADIYSYGIVVLEIVSGQKSTNVKEDEDGREYLLQLNSILIVALSSFTFSPPIYPQY* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02228 418 SUPERFAMILY Protein kinase-like (PK-like) 144 393 IPR011009 -
Lapu6g02228 418 SMART serkin_6 161 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02228 418 ProSiteProfiles Protein kinase domain profile. 161 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02228 418 Pfam Protein kinase domain 162 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02228 418 Gene3D - 1 79 IPR038408 -
Lapu6g02228 418 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
Lapu6g02228 418 FunFam Os07g0541700 protein 238 324 - -
Lapu6g02228 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Lapu6g02228 418 Gene3D Transferase(Phosphotransferase) domain 1 238 405 - -
Lapu6g02228 418 FunFam Cysteine-rich receptor-like protein kinase 2 125 237 - -
Lapu6g02228 418 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 396 - -
Lapu6g02228 418 Gene3D Phosphorylase Kinase; domain 1 138 237 - -
Lapu6g02228 418 ProSiteProfiles Gnk2-homologous domain profile. 1 79 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02228 Lapu-Chr6 21767768 21770083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02228 22 396 Receptor kinase-like Gene Family AT1G56120 41.910 4.08e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu6g02228 Pkinase 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02228 - - vun:114187094 635.18