Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02227 ATGGTGCAGCTAAGGCTCCTAGACCTAACCTTGTTGGTGCTGTGGTCATGGTGGAGCTTAGAGAGTACAGTGGGAGATCCTCAAATATTTTTTCTCAAATGGGATTGCAGCGGATTCACTGTACCCAACTTGTCAAATTTCATGCAAAACCTAAACGCGAGTTTGGATGATCTGACAGCACAAGTTAGCAACCAAAGCAAGCACTTTGCAACTGCTCAAGGAACCACCGGAACTGATCCTGTCTATGCCATGTTTCAATGCAGGAACTACCTCTCTATCACGGACTGCGCCACCTGCCTTGCCACCGCCGCCGCCAAAATCCGCAACTGCACCACCGGAGTCAACGGTGCCCGTGTTATTTACGATGGCTGCTTCCTCAGGTACGAGAGCAATGCCTTCTTTGACCAGATCATGCCTCGCAGCAGCATACTTTGTGGAAATCAGACTGCAAATGAAAGCACAGATTTTAGTGCAGCTGGACAGCAAGTGATAATGGATTTACAAATAGCAACACCAAAAATCACTGGCTTCTATGCAGCAACTAAGACACAAGCGGTTGATGGTGCAATCTATGCCATTGCACAGTGTGCTGAAACTCTCTCACATGATAATTGTCTGGAATGCTTGTCAGTTGAAAGTAGCAGCATACAAGGTTGTCTTCCAAATACAAATGCTAGGGCCTTCGATGCTGGTTGTTTTATGAGATACTCCACCACACCCTTCTTTGCTGATAACCAAACCATTGATATCAGTCCCTTCTTAAAACAAGGCGGAAGTTCAAGCAAGAAGTGGGTCATTATTGGTGGTGTTGTTGGGGGTGCAGCCATTGTTGTGATCCTTCTTTTATTATGTCCATGGCGTAGAAGACCCCAAAGTCCCAAGAGAGTTCCTGTTGGTAACATATTGGAAGCGACTGAGTTGAAAGGTCCAAAGAAATACAAGTACAGCGACTTGAAAGCTGCAACAAAAAATTTTAGTGAGAAAAATAAACTAGGAGAAGGAGGCTTTGGGGCTGTATATAAGGGGACTATGAGAAATGGAAAAGTCATTGCAGTCAAAAAGTTAATTTCAGGAAAATCCAGCAAGATAGATGACGATTTTGAAAGTGAAGTAACGCTTATAAGTAATGTTCATCACAGAAATCTGGTTCGGCTTCTTGGTTGTTGCAGTAAAGACCAAGACAGAATACTTGTCTATGAATTCATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTAAAATAAAAGGTTCTCTCAACTGGAAACAACGCTATGATATAATTTTGGGCACGGCAAGGGGATTGACCTATCTGCATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGAAGAACTTCAGCCCAAAATTTCTGATTTTGGTTTGGTGAAGCTTCTACCTGGGGACCAATCTCATCTTAGCACAAAATTTGCAGGAACAATGGGATACACAGCACCCGAATATGCACTCCATGGTCAATTATCAGAAAAGGCTGATACATACAGCTACGGAATTGTGGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTTAAGATTGTTGATGATGATGCTGAAGATGAATACCTTCTTCGACGAGCATGGAAATTGAATGAGAGAGGCATGCATTTGGAGTTGGTGGACAAAAGCTTAGACCCTAATAGCTATGATGCAGAAGAAGTGAAGAAAGTCTTAGACATTGCTTTGTTATGCACTCAAGCATCGGCTGCAATGAGGCCAGCCATGTCTGAAGTAGTAGCTCTACTAAGCAGCAATGACTTACTTGAGCATATGAGACCTACAATGCCTCTCTTTATTGAGTCCAAGTTAAGACCCCACAAAGACATCTTTGCCTCAACTGGTTCCTCTACATCTAATGCTACTGCCTCCAATTCTATAGAACCTGCTCCATGA 1944 0.427 MVQLRLLDLTLLVLWSWWSLESTVGDPQIFFLKWDCSGFTVPNLSNFMQNLNASLDDLTAQVSNQSKHFATAQGTTGTDPVYAMFQCRNYLSITDCATCLATAAAKIRNCTTGVNGARVIYDGCFLRYESNAFFDQIMPRSSILCGNQTANESTDFSAAGQQVIMDLQIATPKITGFYAATKTQAVDGAIYAIAQCAETLSHDNCLECLSVESSSIQGCLPNTNARAFDAGCFMRYSTTPFFADNQTIDISPFLKQGGSSSKKWVIIGGVVGGAAIVVILLLLCPWRRRPQSPKRVPVGNILEATELKGPKKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMRNGKVIAVKKLISGKSSKIDDDFESEVTLISNVHHRNLVRLLGCCSKDQDRILVYEFMANNSLDKFLFGKIKGSLNWKQRYDIILGTARGLTYLHEEFHVSIIHRDIKSGNILLDEELQPKISDFGLVKLLPGDQSHLSTKFAGTMGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQKSTDVKIVDDDAEDEYLLRRAWKLNERGMHLELVDKSLDPNSYDAEEVKKVLDIALLCTQASAAMRPAMSEVVALLSSNDLLEHMRPTMPLFIESKLRPHKDIFASTGSSTSNATASNSIEPAP* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02227 647 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
Lapu6g02227 647 Coils Coil 48 68 - -
Lapu6g02227 647 Gene3D Phosphorylase Kinase; domain 1 300 401 - -
Lapu6g02227 647 SUPERFAMILY Protein kinase-like (PK-like) 309 618 IPR011009 -
Lapu6g02227 647 Gene3D - 29 133 IPR038408 -
Lapu6g02227 647 Gene3D - 140 241 IPR038408 -
Lapu6g02227 647 MobiDBLite consensus disorder prediction 627 647 - -
Lapu6g02227 647 ProSiteProfiles Protein kinase domain profile. 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02227 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 636 - -
Lapu6g02227 647 FunFam Cysteine-rich receptor-like protein kinase 2 402 607 - -
Lapu6g02227 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Lapu6g02227 647 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Lapu6g02227 647 Gene3D Transferase(Phosphotransferase) domain 1 402 609 - -
Lapu6g02227 647 CDD STKc_IRAK 331 599 - -
Lapu6g02227 647 SMART serkin_6 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02227 647 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Lapu6g02227 647 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Lapu6g02227 647 Pfam Salt stress response/antifungal 145 238 IPR002902 -
Lapu6g02227 647 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Lapu6g02227 647 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Lapu6g02227 647 FunFam Cysteine-rich receptor-like protein kinase 2 288 401 - -
Lapu6g02227 647 Pfam Protein tyrosine and serine/threonine kinase 328 598 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02227 Lapu-Chr6 21760546 21765456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02227 2 638 Receptor kinase-like Gene Family AT1G70520 37.654 4.95e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu6g02227 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02227 - - gmx:100776342 1036.17