Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02204 ATGGCGATTCGAGATCAAAATGAATTTAACAGATTACAGGGTGGCCCTTCAGTAGGAAGTGGTGTATCGTTGAGTTCTGGAGTGCATTCTGTTACACATATTCAACTTAATGATCAGTTTTCTTGTGGGAGTGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGGTGGACAGAGGAAGAACATAAGAAATTCCTTGAAGCTTTAAAGCTGCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAATGTTACAAATACAACGGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCTCGGAAGCAAGTTGAGACTCCTAACAAAGAAATTACAATCCCAGAACAACTTGTGAAGTCTAGTTCTCTGAAGTCGTCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCGGGAGCTGGTTCAGACAGCCTTAGTTCCTCAGATTCAGACACACCAAATGAAAGTTTGTCCCCTGTGTCATCCATTAGTTACATCCATACAAGTGGTTTTACATGTGCCGAACCCAACACAACATCCGAAGAAGCTGGAATAAATGCTGATTCTTCTCATGATGAGAAACCTCTTGTGGAATTCAAGCTTCCTAAAAACGAAACTGTTTACATCAAAGAAGACACTACAGAAGAATCTTCCGGCCAGACTTTCAAACTTTTTGGTATTACACTTTTTGTAACAGATACATGCAAACCCTCTTCTCCAACAATTGAGGCATGCAAACCAATACCTCTAAACATACGCAAAGGGGATGGAAGATTGGAACTTCTTGGCCACATCACACCAAGTGAAACATCAGCCATATCCCTGCTAAAGGTGAGAGTGGGTCCTGAAACATGTGGGAAAGGGTTTGTTCCATATAAAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAGATGATAATAGAGAAGAGCAATGCATGCATCTTTCCTTGTAG 1086 0.418 MAIRDQNEFNRLQGGPSVGSGVSLSSGVHSVTHIQLNDQFSCGSDYALKVRKPYTITKQRERWTEEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNVTNTTESIEIPPPRPKRKPMHPYPRKQVETPNKEITIPEQLVKSSSLKSSDFDQENQSPKSVLSGAGSDSLSSSDSDTPNESLSPVSSISYIHTSGFTCAEPNTTSEEAGINADSSHDEKPLVEFKLPKNETVYIKEDTTEESSGQTFKLFGITLFVTDTCKPSSPTIEACKPIPLNIRKGDGRLELLGHITPSETSAISLLKVRVGPETCGKGFVPYKRCMAGRENQSSSVTDDNREEQCMHLSL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02204 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Lapu6g02204 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Lapu6g02204 361 SMART sant 59 107 IPR001005 -
Lapu6g02204 361 MobiDBLite consensus disorder prediction 214 233 - -
Lapu6g02204 361 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Lapu6g02204 361 MobiDBLite consensus disorder prediction 126 143 - -
Lapu6g02204 361 PANTHER SWI/SNF COMPLEX-RELATED 46 243 - -
Lapu6g02204 361 MobiDBLite consensus disorder prediction 109 201 - -
Lapu6g02204 361 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Lapu6g02204 361 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Lapu6g02204 361 Gene3D - 62 108 - -
Lapu6g02204 361 MobiDBLite consensus disorder prediction 148 201 - -
Lapu6g02204 361 CDD SANT 62 105 IPR001005 -
Lapu6g02204 361 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Lapu6g02204 361 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02204 Lapu-Chr6 21558789 21562306 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu6g02204 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02204 - - gmx:780539 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02204 6 21558789 21562306 Lapu6g02204 6 21558789 21562306 ECH