Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02203 ATGATTTGCTTCTCTATGCCATCGCTTGTAGCAGCAACAACAGCAACGAAACGCAAATCAATGTCAAAACTAACCCTTCTTTTTTTTCTTCTATTCACATTCTTCAATTCTTCAACAGTCTCAAGTTTATACTCTCCTTCGCCTCCCGCCGCGCCATTTTCCCAAACTACCCCTGATCCCGACTCTTCTCCACGCGCCGAGTGGCTCTTCGCCTACGCCACGCACTACGCCGCCAGCGACGCCCTTGGCGGCGCATGCGGCTACGGCGACCTTCCCAACGGCATTGCCTCCGCCGCCCTCAGCGAAGCCCTATTCGATCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACGGTGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTCGCCGTCACTGCCACCAATTTCTGCGCCCCGAACTACGGGTCCGACGCCGATAGCCTCGGAGGACATTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCATTGAAGTTTTCGAGAAAATTGCAATCTGGAAAACTGGCACTGGCAACATGCCAGTGCAATATCGCAGGATAGAGTGCAGAAGAGAAGGGGGAATCCGGTTCACAGTCAGTGGTTCTGGGATCTTCATTTCGGTGCTGATCAGCAATGTGGGAGGAATGGGGGACATTGTGGGTGTGAAGGTGAAGGGTTCAAAAACTGGTTGGCTTTCTATGGGTAGGAATTGGGGTCAGAACTGGCATGTTAATGCTCTTCTACAGAATCAACCTCTTTCTTTTGAGGTCACTGCTAGTGATGGAGTAACTGTTACATCTTACAATGTTGCTCCCATGGATTGGACCTTTGGACAATCTTTTCAAGGAAAACAATTTCAACCTTGA 888 0.5259 MICFSMPSLVAATTATKRKSMSKLTLLFFLLFTFFNSSTVSSLYSPSPPAAPFSQTTPDPDSSPRAEWLFAYATHYAASDALGGACGYGDLPNGIASAALSEALFDRGQICGACFELRCREEDGDFDRRWCISGASVAVTATNFCAPNYGSDADSLGGHCNPPKQHFVLPIEVFEKIAIWKTGTGNMPVQYRRIECRREGGIRFTVSGSGIFISVLISNVGGMGDIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVTASDGVTVTSYNVAPMDWTFGQSFQGKQFQP* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02203 295 Pfam Expansin C-terminal domain 202 279 IPR007117 -
Lapu6g02203 295 SMART dpbb_1 97 191 IPR007112 -
Lapu6g02203 295 CDD DPBB_EXPA_N 67 196 - -
Lapu6g02203 295 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 211 290 IPR007117 -
Lapu6g02203 295 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 83 201 IPR007112 -
Lapu6g02203 295 PRINTS Expansin signature 276 292 IPR002963 GO:0009664
Lapu6g02203 295 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Lapu6g02203 295 PRINTS Expansin signature 92 106 IPR002963 GO:0009664
Lapu6g02203 295 PRINTS Expansin signature 200 212 IPR002963 GO:0009664
Lapu6g02203 295 PRINTS Expansin signature 157 174 IPR002963 GO:0009664
Lapu6g02203 295 PRINTS Expansin signature 247 268 IPR002963 GO:0009664
Lapu6g02203 295 SUPERFAMILY Barwin-like endoglucanases 67 219 IPR036908 -
Lapu6g02203 295 Gene3D - 201 293 IPR036749 -
Lapu6g02203 295 PANTHER EXPANSIN-A15 27 293 IPR002963 GO:0009664
Lapu6g02203 295 Pfam Lytic transglycolase 98 191 IPR009009 -
Lapu6g02203 295 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Lapu6g02203 295 PRINTS Expansin/Lol pI family signature 67 82 IPR007118 GO:0005576
Lapu6g02203 295 PRINTS Expansin/Lol pI family signature 184 200 IPR007118 GO:0005576
Lapu6g02203 295 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Lapu6g02203 295 Gene3D - 53 197 IPR036908 -
Lapu6g02203 295 SUPERFAMILY PHL pollen allergen 198 289 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02203 Lapu-Chr6 21556089 21557654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02203 67 294 Expansin Gene Family AT3G03220 69.231 6.38e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02203 - - gmx:100790211 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02203 6 21556089 21557654 Lapu6g02203 6 21556089 21557654 ECH