Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02191 ATGGCCATGCTTAGTTTCCTTTTCATTCTCATGCTTTTAGCCTCCTTTGAGGCTCTCTCATATCAAGCCATTCCCTCAGAAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGACATTGAAAACCAAAACTCCTGCCTCACAAACATCCACAACGAGCTCACTAAAATAGGCCCTCCAAGCCCCACTTCAGTGATGAGTGCAGCACTGAAGGCCACAATCAACGAAGCAATAGTGGCCATTGACAACATGACAAAGATCACCACTTTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTCTTAGATTTCTCGGTTTCTGAGCTGGCATGGTCGTTGGGGGAGATGAGGAGAATCCGTGCAGGAGATACCAATGTGCAATACGAGGGCAACCTCGAAGCGTGGCTTAGTGCAGCACTGAGCAACCAAGACACGTGCATTGAAGGGTTTGAAGGCACAGATAGACGCCTTGAGAGTTACATCAGTGGAAGCTTGACACAAGTCACACAACTCATCAGCAATGTTTTGTCCTTGTACACTCAATTGCATGCCTTACCCTTTAAGCCTCCAAGAAATACTACTGCAACTACTACAACAACAACTGAATCTGATGGAACCTTAGAGTTTCCTGAGTGGATGAGTGAGGGTGATCAAGAGCTGCTCAAAGCCAAGCCACATGGTGTGCGTGCAGACGCGGTTGTGGCTTTGGATGGGAGTGGTCACTATCGCTCTATTGCCGAAGCTGTTAATGCAGCTCCGAGTCACAGTGAAAGGAGGTATATTATTTACGTGAAAAAGGGACTTTACAAGGAGAATGTGGACATGAAGAAGAAGATGACCAACATCATGCTCGTAGGAGATGGTATTGGCCAAACCATTATCACTAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACACTTGCTGTATCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCAGTGAACCATCAAGCGGTGGCACTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGTCACCAAGATACCCTCTACGCTCACTCCCTACGACAGTTCTACCGTGAGTGCGAAATCTATGGCACCATAGACTTCATTTTCGGCAACGGTGCTGCAGTGTTGCAAAACTGCAAAATATACACCAGAGTCCCACTTCCCTTGCAGAAGGTTACCATCACGGCCCAAGGAAGAAAAAGCCCACACCAGAGCACTGGCTTCACCATCCAGGACAGCTTCGTTCTCGCCACCCAGCCCACCTACTTGGGCCGGCCCTGGAAGCAATACTCTAGGACAGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGAGGGTGGCTTGAGTGGTTCGGAAACTTTGCCCTCAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCTGGTGCATCGCTGGCGGGCCGGGTCAGATGGCCCGGTTATCATGTAATTAAAGATGCTTCCACGGCTAGTTTTTTCACTGTTCAGAGGTTCATCAATGGTGACACGTGGCTGCCAAGGACAGGTGTCAAGTTTACAGCAGGTCTCACCAATTGA 1635 0.4911 MAMLSFLFILMLLASFEALSYQAIPSEIQTQDMQALIAQACMDIENQNSCLTNIHNELTKIGPPSPTSVMSAALKATINEAIVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDTNVQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHALPFKPPRNTTATTTTTTESDGTLEFPEWMSEGDQELLKAKPHGVRADAVVALDGSGHYRSIAEAVNAAPSHSERRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSFVLATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGASLAGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02191 544 NCBIfam pectinesterase inhibitor domain 4 192 IPR006501 GO:0004857
Lapu6g02191 544 Pfam Pectinesterase 240 528 IPR000070 GO:0030599|GO:0042545
Lapu6g02191 544 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Lapu6g02191 544 SMART PMEI_2 32 187 IPR006501 GO:0004857
Lapu6g02191 544 Pfam Plant invertase/pectin methylesterase inhibitor 36 187 IPR006501 GO:0004857
Lapu6g02191 544 CDD PMEI-like_3 49 193 - -
Lapu6g02191 544 Gene3D - 235 542 IPR012334 -
Lapu6g02191 544 FunFam Pectinesterase 234 542 - -
Lapu6g02191 544 SUPERFAMILY Pectin lyase-like 237 541 IPR011050 -
Lapu6g02191 544 FunFam Pectinesterase 34 193 - -
Lapu6g02191 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 191 IPR035513 -
Lapu6g02191 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
Lapu6g02191 544 PANTHER PECTINESTERASE 14 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02191 Lapu-Chr6 21442640 21444722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02191 1 544 Carbohydrate Esterase AT3G05620 61.802 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02191 K01051 - gmx:100810565 1010.75