Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02190 ATGGCTATTTCCAAGCTATCCTTGCGCTTATTCATGGTTTATTTTCTGAGCATTTTCTGGAACTGTGCATTTTTTGCATCCTCCTCTTACTCCACCGATACCATTTGCAACCTCACACCGTATCCATCATTTTGCGTAATCAACTCACCTTCTTATGGCCATGGCGACATACACGATTATGGCCGTTTTTTCGCAGAAAAATCCTTGTCATCCTCAAAAATGTTTCTCTCATTACTCTCTAAATACCTTAAATCTCCATCCAACTTCTCAAGCTCTACGATCCTTTCCCTTCAAGATTGCTACCTTCTAGCTGACCTAAACACGGATTTTGTGACACAGACCCTAAAAAGCATCAATTCCAGTAATACCCTCGGTTTCTCAGAAGCTGAAAAATTGCACACTTTGCTTAGTGCTACACTGACCAACCTCGACACGTGCTTAAATTGCCTTCACGAAACCACGTCAACCCCCGACAATGACCTACTGACACATATTTCCAACGGAACCAAGCTTCATAGCATATCTCTTGCAATCTTCGTGAGGGGATGGAGAATCAACAAAAACTCAGAGAGAAAACTTGAAAGAAATGATCACATAATGTGGGAACAGAAGCTGTACGAGCTTATCAGAAAAAGAGGAAGAAAACTGCTTCAGTTGGGCGAAGACAGAGTTTTAGTGAACCAACGCGTGGTGGTGAACCCAGACGGGTCTGGAAACTACAAAACAATCAATGATGCAGTGGCTGCGGCTCCAAATTACTCAGGGGCTGGTAACGGTTTTTTCGTGATTCATGTGGTGGGTGGAGTGTATGAAGAGTATGTTTCTATTCCCAAAAATAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAGACCATAATCACGGGCAATCGCAGCGTGGCTGATGGTTGGAATACTTTCAGTTCTGCTACATTCGGCGTGATTGCTGAAGGTTTTGTGGCAATGAACATAACATTTCGCAACACAGCTGGACCAGTGAAGCAACAAGCAGTAGCCCTCGTAAGCGGGTCAGACTTTTCTGCATTTTACTATTGTAGCTTTGAAGGGTACCAAGACACCTTATACACCCATTCTTTGAGGCAATTTTACAGAAAGTGTGATATTTATGGTACAGTGGACTTCATATGTGGTAATGCAGCAGTTGTCTTCCAAAACTGTAACATCTACCCTAGACTCCCAATGCAAGGCCAATTCAATGTCATCACTGCACAGTGTAGGGATTCAACTCTCCAAAATAGTGGCATCTCCGTACACAATTGTACCATAACCGCGGCAAGTGACTTGAACGGTGGTACAAAAACGTACCTGGGAAGACCCTGGAGGAAATATGCAAAAACAGTTTATATGCAGTCTTTCATAGACAGTTTAGTAGATCCATCGGGTTGGACACCTTGGTCAGGGGACTATGCTTTGGAAACCCTTTATTATGCAGAATTTGATAATCATGGGCCTGGATCTAACACTAGTAATAGGGTTACTTGGCCTGGGTACCATGTGATCAATGCCACAGATGCAGTTAATTTCACAGTTGCTAATTTTATACGAGGTGGTCTTTGGCTGCCTGCAACAGGAGTACCTTACTCTCCTGGTTTAGATTGA 1623 0.4307 MAISKLSLRLFMVYFLSIFWNCAFFASSSYSTDTICNLTPYPSFCVINSPSYGHGDIHDYGRFFAEKSLSSSKMFLSLLSKYLKSPSNFSSSTILSLQDCYLLADLNTDFVTQTLKSINSSNTLGFSEAEKLHTLLSATLTNLDTCLNCLHETTSTPDNDLLTHISNGTKLHSISLAIFVRGWRINKNSERKLERNDHIMWEQKLYELIRKRGRKLLQLGEDRVLVNQRVVVNPDGSGNYKTINDAVAAAPNYSGAGNGFFVIHVVGGVYEEYVSIPKNKQYLMMIGDGINQTIITGNRSVADGWNTFSSATFGVIAEGFVAMNITFRNTAGPVKQQAVALVSGSDFSAFYYCSFEGYQDTLYTHSLRQFYRKCDIYGTVDFICGNAAVVFQNCNIYPRLPMQGQFNVITAQCRDSTLQNSGISVHNCTITAASDLNGGTKTYLGRPWRKYAKTVYMQSFIDSLVDPSGWTPWSGDYALETLYYAEFDNHGPGSNTSNRVTWPGYHVINATDAVNFTVANFIRGGLWLPATGVPYSPGLD* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02190 540 SMART PMEI_2 26 178 IPR006501 GO:0004857
Lapu6g02190 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 179 IPR035513 -
Lapu6g02190 540 PANTHER PECTINESTERASE 16 529 - -
Lapu6g02190 540 FunFam Pectinesterase 223 539 - -
Lapu6g02190 540 Gene3D - 224 539 IPR012334 -
Lapu6g02190 540 Pfam Pectinesterase 230 524 IPR000070 GO:0030599|GO:0042545
Lapu6g02190 540 CDD PMEI-like_3 34 179 - -
Lapu6g02190 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 181 IPR035513 -
Lapu6g02190 540 Pfam Plant invertase/pectin methylesterase inhibitor 33 178 IPR006501 GO:0004857
Lapu6g02190 540 SUPERFAMILY Pectin lyase-like 228 538 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02190 Lapu-Chr6 21434525 21437503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02190 6 539 Carbohydrate Esterase AT4G02330 51.993 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02190 K01051 - gmx:100801141 813.913