Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02189 ATGGGGGGTGATGGACAGAAGAAGAGAGTCGCCATCATTGGCGTTTCTACCTTCTTGCTGGTGGCTATGGTGGTAGCCGTGACGGTTAGCGCGAACCTGAACAACAAGGGAGCAAGCGAGGCGGAAAAGGAAGAAACAAAATCACACGTAGCTTCCTCCATGAAAGCGGTCAAAACCCTTTGCGCACCCACGGATTACCAGGAAGAATGCGAGGATAGTCTCAATGCAAACGCCGGCAACATCACTGACCCCAGGGAACTCATAAAAATTGCCTTCAACATCACCATCACCCAAATCAGCGAAGGGCTCGGGAAAACGCAGCTCATGCACGAGGTCGAGAACGACCCCAGAACCAAGGATGCCCTCGACACGTGCAAGCAGCTGATGAACCTCTCCATCGAGGAGTTCAATCGCTCCATCCAGAGGTTCAACAAGTTCGACCTCAACAGCCTCGACCGCATCCTCACCAGTCTCAAGGTGTGGCTCAGCGGCGCCGTCACATACCAGGAAACGTGCCTTGACGCGTTCGAGAACACCACTACCGACGCTGGTAAGAAGATGCAGGAGCTCTTGCAAACCTCCATGCACATGAGCAGCAACGGCCTCGCTATCATCACCGAGCTGTCGAAAACTCTCTCCGACATGCATGTCTCCAAGTCTGGGCGCCGCCTCCTGACTGCCGCTGAGGATTTGCCCGTTCTTGGCCACGACGAGACCAACGACTTTGTCCTTCCAGATTGGGTTGAGAATCGCGTTGGCGTTCGCAGACTCCTGCGTATGACAGGACGCAAACGCATGGCGCATGTCGTTGTTGCAAAGGATGGTAGTGGAAATTTCACCACCATCGGTGAAGCGTTGAAGTCAGTGCCCAAGAAAAACTTAAGGCCGTATATTATCTACGTCAAGGAGGGCGTTTACGATGAGTACGTCGAAGTTTCCAGAAATATGACCCATGTCGTCATGATTGGTGATGGTGGTAAGAAGTCGAGGATCACAGGCAGTAAAAACTTCGTCGATGGGGTCGGAACCTACAGAACCGCTAGTGCTGCCATTCTTGGAGATTTCTTCGTTGGCATAGGTATGGGATTTGAGAACTCCGCCGGTGCTGAAAAACACCAAGCAGTGGCGTTGAGGGTTCAATCTGACAGGTCCATCTTCTACAAGTGCCGAATGGATGGGTATCAAGACACACTTTACGCGCACACCATGCGTCAATTCTACCGCGACTGCGTCATTTCAGGTACCATCGACTTTGTCTTCGGTGATGCACTAGTTGTGCTCCAGAACTGCACATTCGTTGTCCGAAAACCGTTGGAAAACCAGAAATGCATTGTAACAGCACAAGGCAGAAAGGAGAGGAACCAGCCGTCGGGTATAATCATCCATGGAGGGGCCATTTTGTCAGACCCCAAGTATTACCCAGTTAGGTTCGACAACCAGGCGTACTTGGCTCGTCCATGGAAGAATTTCTCAAGGACCATCTTTATGGACTCGTACATCGGTGACTTGATTACACCCGATGGCTACATGCCATGGCAGACAGCGGAAGGTTTAAGCGGAATGGACACTTGCTTCTATGCCGAGATCAATAACCGTGGACCAGGTGCAGACAAGTCGAAACGCGTGAAATGGGAGGGAATCAAGACCCTCTCAAAGGACGTAGCAACAACATTCTTGCCATCCCTCTTCTTCCATGGAGATGACTGGATTAGGGTCACCAGGGTTCCATACAACTCTGGCGTGGCCTCCCCCGCCCATTGA 1761 0.5185 MGGDGQKKRVAIIGVSTFLLVAMVVAVTVSANLNNKGASEAEKEETKSHVASSMKAVKTLCAPTDYQEECEDSLNANAGNITDPRELIKIAFNITITQISEGLGKTQLMHEVENDPRTKDALDTCKQLMNLSIEEFNRSIQRFNKFDLNSLDRILTSLKVWLSGAVTYQETCLDAFENTTTDAGKKMQELLQTSMHMSSNGLAIITELSKTLSDMHVSKSGRRLLTAAEDLPVLGHDETNDFVLPDWVENRVGVRRLLRMTGRKRMAHVVVAKDGSGNFTTIGEALKSVPKKNLRPYIIYVKEGVYDEYVEVSRNMTHVVMIGDGGKKSRITGSKNFVDGVGTYRTASAAILGDFFVGIGMGFENSAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHTMRQFYRDCVISGTIDFVFGDALVVLQNCTFVVRKPLENQKCIVTAQGRKERNQPSGIIIHGGAILSDPKYYPVRFDNQAYLARPWKNFSRTIFMDSYIGDLITPDGYMPWQTAEGLSGMDTCFYAEINNRGPGADKSKRVKWEGIKTLSKDVATTFLPSLFFHGDDWIRVTRVPYNSGVASPAH* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02189 586 FunFam Pectinesterase 263 581 - -
Lapu6g02189 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Lapu6g02189 586 SUPERFAMILY Pectin lyase-like 268 579 IPR011050 -
Lapu6g02189 586 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Lapu6g02189 586 Pfam Pectinesterase 268 567 IPR000070 GO:0030599|GO:0042545
Lapu6g02189 586 Gene3D - 263 581 IPR012334 -
Lapu6g02189 586 NCBIfam pectinesterase inhibitor domain 48 208 IPR006501 GO:0004857
Lapu6g02189 586 CDD PMEI-like_3 59 210 - -
Lapu6g02189 586 PANTHER PECTINESTERASE 17 571 - -
Lapu6g02189 586 FunFam Pectinesterase 53 209 - -
Lapu6g02189 586 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lapu6g02189 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 210 IPR035513 -
Lapu6g02189 586 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Lapu6g02189 586 SMART PMEI_2 52 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02189 Lapu-Chr6 21430888 21432746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02189 6 581 Carbohydrate Esterase AT3G05610 46.632 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02189 K01051 - gmx:100801686 1002.28