Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02179 ATGATGATGACGACAATGGAGGGGATGATGGACAAGGCGGTGCTGGATGATGTCATTAGGAGGCTTCTCGAAGGGAAAGGAGGCAAACAGGTTCAGCTCTCTGAGTCGGAGATCCGTCAACTCTGCGTCAATGCCCGACAAATCTTCCTCTCTCAGCCAATTCTTCTCGACCTCCGTGCCCCCATCCGCATCTGCGGTGATATACATGGTCAGTACCAGGACTTACTTAGGCTTTTTGAATATGGTGGCTACCCTCCAGCAGCAAACTACTTGTTTCTGGGGGATTATGTGGACAGAGGGAAGCAAAGTTTGGAGACTATTTGTTTGCTTTTGGCCTACAAAATAAGCTATCCAGACAAAATTTTTCTCTTGAGGGGAAACCATGAAGAAGCAAAGATTAACCGTATATATGGTTTTTATGATGAATGTAAACGGAGGTTCAACGTAAGGCTATGGAAGATATTTACCGAGTGCTTTAACTGTTTGCCGGTGGCTGCCCTCATTGATGAGAAAATACTTTGTATGCATGGGGGACTCTCTCCAGAATTAGAAAATTTAGATCAGATAAGAGAGATTCAAAGGCCCACTGAAATTCCAGATAGTGGTCTCCTATGTGATCTGCTTTGGTCTGATCCTGATGCTAGCATTGAGGGTTGGGCGGACAGTGACCGAGGCGTTTCATGTACCTTTGGACCTGATGTAGTTGCGGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGGTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCGAATTATGGTGGAGAATTTGACAATGCTGGTGCATTGTTAAGTGTTGATGATTCTCTTGTATGTTCCTTTGAGATATTGAAACCCGCTGATAGAGCATCAGGAAGTAGTTCTTCGAAAATGAATTTTAAGAAGGTAAAATATCAACTATCGCTGTTGTATTGTTTGGTAGTCTCATGTTGA 999 0.4304 MMMTTMEGMMDKAVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLDLRAPIRICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKISYPDKIFLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFTECFNCLPVAALIDEKILCMHGGLSPELENLDQIREIQRPTEIPDSGLLCDLLWSDPDASIEGWADSDRGVSCTFGPDVVAEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPADRASGSSSSKMNFKKVKYQLSLLYCLVVSC* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02179 332 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 18 312 - -
Lapu6g02179 332 SMART pp2a_7 33 303 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Lapu6g02179 332 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Lapu6g02179 332 SUPERFAMILY Metallo-dependent phosphatases 10 304 IPR029052 -
Lapu6g02179 332 CDD MPP_PP1_PPKL 14 301 - -
Lapu6g02179 332 FunFam Serine/threonine-protein phosphatase 6 311 - -
Lapu6g02179 332 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
Lapu6g02179 332 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Lapu6g02179 332 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Lapu6g02179 332 Gene3D - 7 310 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02179 Lapu-Chr6 21375585 21378920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02179 56 249 Calmodulin-binding Proteins AT5G63870 32.751 9.41e-32 119