Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02177 ATGAGTCGAGGAAGTGCAGCAGGAGCGAAGGGGAAGAAGAAGGGGGCGACATTCACCATTGACTGTGCGAAGCCAGTGGAAGACAAGATCATGGACATTGCCTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGACTCTGTTACTGTTACCCGCGAGAAGACCAAGATCATTGTCACCTCTGACAGTAACTTCTCCAAACGGTATCTGAAGTACTTGACTAAGAAGTACTTGAAGAAGCACAATGTGCGTGACTGGCTCAGAGTTATTGCTTCAAACAAGGATAGAAGTATTTATGAACTGAGGTACTTCAACATTGCTGAGAATGAGGGTGAGGAAGAAGATTAG 375 0.4613 MSRGSAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02177 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Lapu6g02177 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lapu6g02177 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lapu6g02177 124 Gene3D - 5 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02177 Lapu-Chr6 21357852 21359558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02177 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.097 1.01e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02177 K02891 - gmx:100499952 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02177 6 21357852 21359558 Lapu7g00394 7 4692565 4694910 ECH
Lapu7g00394 7 4692565 4694910 Lapu6g02177 6 21357852 21359558 ECH
Lapu6g02177 6 21357852 21359558 Lapu6g02177 6 21357852 21359558 ECH
Lapu6g02177 6 21357852 21359558 Lapu7g00394 7 4692565 4694910 PCT