Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02159 ATGTCAAACTCAAACATCACAAGTTGTGACAGTTGGAGCTTCTCCACAGAGAACACTGGAGAAGATGCAGGAGCTGTTAAACACCAGTTAGAGATGCTTGGCCAACTCCATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGCTCAAACACAAATTCACAACCACCTCACAAGAAGAAGAGAAACCTACCAGGAAATCCAGACCCAAGTGCTGAAGTGGTGGCTCTTTCGCCAAACACCCTGGTGGCCACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAATCTTCAATTGCACCGTCGCGGGCATAACCTACCGTGGAAGCTGAAACTGAGAACCACTACCGAAGTGAAAAAGCGCGTTTATGTTTGTCCTGAACCATCGTGTGTACACCACAATCCAGCTCGGGCACTGGGTGATCTCACGGGCATTAAAAAGCACTTTAGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATACGCTGTTCATTCTGATTGGAAAGCACATTCCAAAATATGTGGAACCAAGGAATACAAATGTGATTGTGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGAGAACAACAAATTTAACGAAGCAGGACAATTGCCAAGTGTTATGCATGGTTCAAACCTGCAACCACCAATAATCCCAAACCTAGTAGCATCACTACCAATCAATACCAATAATCACAACCAACCATTATCACTCCCTCACGACCTCATTGCAACAATTCCAGCAAAACCCTTCAACAACAACGTGGCAGCATTGACAAGAAGCATCTCATCCACCTCTTCTCCCTCTCAACTATGCTCGAACTCATCAAACATCAACATGTTCGAGGAAAATGCTCAAACTCACATGTCCGCCACAGCATTGCTTCAAAAGGCTGCACAAATGGGTGCAGCAGTGAATGGTAACAACAACAGCATGATGACTGAAAGGGGCTATGCCACAAGCATGGCACCACCATCATATGGGGTCATGAACCACCACATTCACAATGGTCAACAAGACTTGTCTCACTATAACTTCAACGCAAATGGGACGATGATGGATGGTGGTGGCAATGGCAATGGCATGGGAGGACTGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTATAGTGGAGTTTTGCATGCAATGAATAATGGCAGGTCAACTTCCATTGATGTTGGTGGAACTAAAGGGAGTGAGGATATGATGACTTTGGACTTGTTGGGGATAGGAGGAGGAGGAGGTGGTGGTGGTGATGGAAATTTCTTTGGTGGTGACCAACAGTCAGAACTAAAGATGGAATATGGAGAAATTAGTCAAATAAGAATTCAGGGCTTGAACCATTTTCAGCAACAAACAGCAGCATATGAAAATTAA 1509 0.4394 MSNSNITSCDSWSFSTENTGEDAGAVKHQLEMLGQLHSPNSNTSTTTNNSNGSNTNSQPPHKKKRNLPGNPDPSAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDENNKFNEAGQLPSVMHGSNLQPPIIPNLVASLPINTNNHNQPLSLPHDLIATIPAKPFNNNVAALTRSISSTSSPSQLCSNSSNINMFEENAQTHMSATALLQKAAQMGAAVNGNNNSMMTERGYATSMAPPSYGVMNHHIHNGQQDLSHYNFNANGTMMDGGGNGNGMGGLSGLDMFNAILDQSKALSKIIEQNNRSSYSGVLHAMNNGRSTSIDVGGTKGSEDMMTLDLLGIGGGGGGGGDGNFFGGDQQSELKMEYGEISQIRIQGLNHFQQQTAAYEN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02159 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 472 IPR031140 -
Lapu6g02159 502 MobiDBLite consensus disorder prediction 36 76 - -
Lapu6g02159 502 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g02159 502 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lapu6g02159 502 Pfam Zinc finger, C2H2 type 91 113 IPR013087 -
Lapu6g02159 502 SMART c2h2final6 167 187 IPR013087 -
Lapu6g02159 502 SMART c2h2final6 132 162 IPR013087 -
Lapu6g02159 502 SMART c2h2final6 91 113 IPR013087 -
Lapu6g02159 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Lapu6g02159 502 Gene3D Classic Zinc Finger 87 114 - -
Lapu6g02159 502 MobiDBLite consensus disorder prediction 36 63 - -
Lapu6g02159 502 FunFam protein indeterminate-domain 12-like 70 138 - -
Lapu6g02159 502 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Lapu6g02159 502 Gene3D Classic Zinc Finger 146 224 - -
Lapu6g02159 502 MobiDBLite consensus disorder prediction 1 23 - -
Lapu6g02159 502 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02159 Lapu-Chr6 21226806 21230155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02159 62 397 IDZ Gene Family AT3G50700 49.628 1.43e-111 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g02159 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02159 - - pvu:PHAVU_006G090800g 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02159 6 21226806 21230155 Lapu7g00377 7 4544821 4548888 ECH
Lapu6g02159 6 21226806 21230155 Lapu6g02159 6 21226806 21230155 ECH
Lapu6g02159 6 21226806 21230155 Lapu7g00377 7 4544821 4548888 PCT