Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02153 ATGGGTCAATTGCACCTATCAAAGATGAAGTTCCGCCACCCCATACCTGACACTTGCAAAAAATCAAATATCGATGAACAACATGGAAAGGCAGATCCACTTGCTCATGCATGTTTAGAGTCAAAATTGTGGACGTCTTCCATGATTCCATCTGATTGGATGTGGTTAACCCCAAGCAAATCCTGTGCTTCCTCAAATGATGAGGCTCACTGTCCTAAACGCCAAAGCATCTGCGAACTTGAAGGAGATACTTCTGTGGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAACAGAAACGGACTGGGATTCATGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCTGTTGGTCTTGACTTTGAGAACAAATTTATCGAATTATGCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTGGGAAGGAATGGAGAGAAACAGACATAATAGGCTCAGCATCACCACCTGCTACATTATGCAAAAATGTGAAATTGCCAAAGGAAGGGAATGATGCAAATCTTGAAATGTTGACTATGGATGAAATTCAGTCTACTGAAATGATTGGATCAATGGACATAAAGGCAGCTGCCGATAAGGAAGCAAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCGGAGGATATAAACTCTGATGATGAACTTGCTTATGAAACAATTTTGACTCCCTTGTTGCCTTCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATGGCTTATGAGAGTGAGTCTCAGAAGGAGTGTCAGGATATTCTAGATTCAACTGATGATATGCTTGAGTTGGAGTTTCCAAAGGAAAAGCCTTCTCTTTCTTTTGGTTACAATTGTCTTATTGGAACTTCATCAAACAATAAATTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCAAATCATTGTGATAGTTTGGCTGGAACCTCTTCTCTAGCAGAGATAAACAGTGAATTCGAAAGCGCCTCTGAGTACCATGTTCTGGGCAGTACTGGCACGAAAACAGTTAATAAAGATATAATGAATAAAAAATGGGGGTCTTTGCCTTTATCTGTGATTGATAAGGTTAGTAACGATTTAGAGCATTCTACTTTACGTGTGACTCATCCAGTTGAAAGTGATATTGGTGATTCTGCTCACTCATATCACCTAAACAGAAACAAGGTTAAAAATAGTGCTTGTATTATAAGGAACAAGGACAAAGATGCTTCAGATGGATTAGTTAACTGTTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTTTCGAGTTGAACAAGCTGAATACGAGTCTGGAACTACTAAAAGGCTTCCTTTAGACAGGAATGACGAACCAAGTACATGCTTTTGGCAGAAACAACTGGATTTAGAGACAATGCAAACTGATGAAGAAGAAATGGAAGAGCAAAAGGTTTGTGAATATGAAGCTAGCAATCATGCTAATCTGTTCCATGGGAAACTGCTCCTTTCAACTGGAAGTGACGGTCCTCTACAAGCTAGTAGGGGAAACCATGATTGTTTTGGTCAACATGAAATGGAAGGTATAGAAGCAAGTACAGTGTTGAGGAACTGTACCCAAGGAGGTTCTGCTTTAATGCATGATGGACCAGGCCTCCATAAGCCTGAAAAAGTATATTTAGTTGATTCCATAGATCAATCAGTGGTTTGCAGGGGTGAAGACCTTAAGGCTGGCTCGACTGTTACCAAACATGTGGCTTCTGATGCCTGTATCCAAAGTACACCTTTAGACACCCAGTTGGGAACTGCTGCTGTTCATGAAGTCAAAGATCCCGAGAGGAATCCACAAACTGATTCTTCTGCTTCAGCCAGTGTGCAAAGCTCGTTCATTATTGATAAAGTGTCGGGTAAATATAATTTTGTGGATCAAAGTTCTCGCCAAAGCTTATCATTGGTGCAACATGATCAGATGGCGTTTTGTGAGAATTCTGTGAAGAAAAGTGCTGCTGGTGATGTGCAAATATTTAGTGAAAAGGTGGATAATGAAAAGCTGGGTGAAAATTTGTTGCATGAGATTATTGGCTCCGAACCCACTGACCTAAAGGGTAATCACATGAAATTAACTGAAATAACCACAAGTAAGAACCCCCTGGCTGATAAGAATATTGAAAGTACTACAACCTCTAATACACATTTACATTTGGATGAAGATAGCTCTGATGAAATGCCAGGGGATGATCTGGATGTCTTTCTTCCGATTTCTGCAAGGAATTCTAAGAAAGGGATGGGAGCTTGCAATGAGTGTGTTACAATTAAAACCCTTGCATCTAATGGGACAAAGGTTGCCACCACTCACTATCAAAATGATGGCTCTCACCTGTACCTATTAACACCTAATATTTTGCCTCCTTCTGTGGATACTGTGCATAAATGGCTACTTTGTAACGAGAGAGGGCATATTCCTGATCATATACATCAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAAACTGAACCTCCTTTTAAGCCGAAGCTGTATCAAGATGCTGATACAGAAAAGATGCCTCAATGCAATGAAGAAGGACAAACAGAAAGAGTGAAAACACACCTAGATGACTCACAAGATACTTCTTCTCAGATATCAGCCCCTGATGGAAAGTCAATCTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTAATCCTCAATTTGATGGAATCAACATTATAGCTCTTGGTTTTCAGAACGATTGTGATTCTATTGTTGAAGTTCTAGTTCTTTTACACAGTAAATCTTTACCGTGTCAGAGAAATTTTGATGGTCTATCTGGCTCTAAAATATTGGTCTTCACTGATGAGAAGCTATTGTTAAAAGAGTTTGTAAAGATTGTGTCATCATCTGACCCTGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCACATCTTGGTTTGGGATTACTTAATAGTCTCTCTCGCACTCCGTCTGAGTCTTTGATTGTTTCTGAAGATGTGAAAACTTCTGAAAAAGATATCTTGGAGATGGATATTCATGACACACCTAGTCTTGATTGTTGTGTGCCAGAGAATTCAATAATCGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGAAGAATTGTCCTTAATGTATGGCGATTGATCCGCGGAGAAGTTAAGTTGAACTTATATTCAGTTGAAGCTGTAGCTGAATCTGTAATGAGGCGGAAAGTTCCTTCCTTTAACCACAAAGTGCTAACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGTTGAACCTTGAGATATTAAACCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAGTCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCACCAGGTTGCTTCTCAACCAGCCATGGAGTGCCTTCCCCTAGTAATGGAACCGGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGGTCAAAGACCAATACACTTGGGGTTAGTCCATTCTCACCAGAGCAACATGTTCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTGACAACTAGAATAATGGTAAAACAAGCAATAAAAAAATTGGCTCCTGCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCTAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTTAATCTACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCCTCTGCTATCTCTGCTATGAATCCTAACCCTGTCACCCTGAAAATGGAAAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAACGATATGTCGGCTACAGTTATGAAAGTCCTCATCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTACGTAGGGACACATGTGGTGCAGTTGCGAAGATAATGGAGCGGTCTTTGAGACTCTTTTTTGAGCAACAGGATATATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGACAAATTCTGCCTTAAAGATTTTATCTTTGCTAAGGAGGTTCGCCTGGGTACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGATGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGTGCCCGTTTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCGTTTAGAATAAATGATTTATATTACATTAATAAACAAATAATACCAGCTTTACGGCGGGTATTTGGGCTTGTTGCGGCTGACCTCAACCATTGGTTTTCAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCAGAATCGACTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGTCCAGGCATCAGCCCGTTTATGCAATGAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTAATTAGCAAGACGTCGAAGTTAGAGCAAGATATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTTGAAAGTGGTGTGAAATGCACGTCTATTTCATGTTTGGTGTTCTTTGAGAGGCGGAAGGTTCAGAAAGAACTGCTATCTGCCACCCATGTTGCTGCAGATAAAGACTTGTACCCTAGATGCAGAGTGGAATGGTTTTGA 5400 0.4069 MGQLHLSKMKFRHPIPDTCKKSNIDEQHGKADPLAHACLESKLWTSSMIPSDWMWLTPSKSCASSNDEAHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIHEATMPSDPGKPLPEDVMKLFSVGLDFENKFIELCSEAETSLFCTPSGKEWRETDIIGSASPPATLCKNVKLPKEGNDANLEMLTMDEIQSTEMIGSMDIKAAADKEAKNLLKWLATSQAAEDINSDDELAYETILTPLLPSATIDKVLEEANMAYESESQKECQDILDSTDDMLELEFPKEKPSLSFGYNCLIGTSSNNKLPQVDGSNDDEFSNHCDSLAGTSSLAEINSEFESASEYHVLGSTGTKTVNKDIMNKKWGSLPLSVIDKVSNDLEHSTLRVTHPVESDIGDSAHSYHLNRNKVKNSACIIRNKDKDASDGLVNCSLRDLMRRKRSFRVEQAEYESGTTKRLPLDRNDEPSTCFWQKQLDLETMQTDEEEMEEQKVCEYEASNHANLFHGKLLLSTGSDGPLQASRGNHDCFGQHEMEGIEASTVLRNCTQGGSALMHDGPGLHKPEKVYLVDSIDQSVVCRGEDLKAGSTVTKHVASDACIQSTPLDTQLGTAAVHEVKDPERNPQTDSSASASVQSSFIIDKVSGKYNFVDQSSRQSLSLVQHDQMAFCENSVKKSAAGDVQIFSEKVDNEKLGENLLHEIIGSEPTDLKGNHMKLTEITTSKNPLADKNIESTTTSNTHLHLDEDSSDEMPGDDLDVFLPISARNSKKGMGACNECVTIKTLASNGTKVATTHYQNDGSHLYLLTPNILPPSVDTVHKWLLCNERGHIPDHIHQETDAENKDVPKCASETEPPFKPKLYQDADTEKMPQCNEEGQTERVKTHLDDSQDTSSQISAPDGKSIFTPLSQIGFRDPASVGCGQQLTLLSIEILAESRGDLLPNPQFDGINIIALGFQNDCDSIVEVLVLLHSKSLPCQRNFDGLSGSKILVFTDEKLLLKEFVKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNSLSRTPSESLIVSEDVKTSEKDILEMDIHDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAESVMRRKVPSFNHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKTNTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPAEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNARVIYGDTDSMFVLLRGRTLKESFQIGSEIASAISAMNPNPVTLKMEKVYHPCFLLTKKRYVGYSYESPHQIEPVFDAKGIETVRRDTCGAVAKIMERSLRLFFEQQDILEVKTYLQRQWKRILSDKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMMVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALRRVFGLVAADLNHWFSEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLVQASARLCNECSENEVAAATAVISKTSKLEQDMQHLVAICHHCGGGDRLLESGVKCTSISCLVFFERRKVQKELLSATHVAADKDLYPRCRVEWF* 1800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02153 1799 CDD DNA_polB_zeta_exo 937 1187 - -
Lapu6g02153 1799 CDD POLBc_zeta 1213 1661 - -
Lapu6g02153 1799 Pfam DNA polymerase family B 1206 1653 IPR006134 GO:0000166|GO:0003677
Lapu6g02153 1799 Gene3D Helix hairpin bin 1331 1391 - -
Lapu6g02153 1799 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 1 1792 IPR030559 GO:0006281|GO:0016035|GO:0019985
Lapu6g02153 1799 MobiDBLite consensus disorder prediction 853 916 - -
Lapu6g02153 1799 MobiDBLite consensus disorder prediction 874 903 - -
Lapu6g02153 1799 Pfam DNA polymerase family B, exonuclease domain 938 1077 IPR006133 -
Lapu6g02153 1799 PRINTS DNA-directed DNA-polymerase family B signature 1374 1386 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu6g02153 1799 PRINTS DNA-directed DNA-polymerase family B signature 1265 1278 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu6g02153 1799 PRINTS DNA-directed DNA-polymerase family B signature 1430 1438 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu6g02153 1799 ProSitePatterns DNA polymerase family B signature. 1432 1440 IPR017964 GO:0000166|GO:0003676
Lapu6g02153 1799 FunFam DNA polymerase zeta 1332 1391 - -
Lapu6g02153 1799 Pfam C4-type zinc-finger of DNA polymerase delta 1698 1771 IPR025687 -
Lapu6g02153 1799 SUPERFAMILY DNA/RNA polymerases 1252 1666 IPR043502 -
Lapu6g02153 1799 Gene3D - 969 1248 IPR036397 GO:0003676
Lapu6g02153 1799 Gene3D - 1507 1674 IPR042087 -
Lapu6g02153 1799 SMART polmehr3 938 1444 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu6g02153 1799 FunFam DNA polymerase 947 1248 - -
Lapu6g02153 1799 FunFam DNA polymerase 1507 1675 - -
Lapu6g02153 1799 SUPERFAMILY Ribonuclease H-like 938 1228 IPR012337 -
Lapu6g02153 1799 Gene3D Palm domain of DNA polymerase 1251 1496 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02153 Lapu-Chr6 21139973 21156755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02153 976 1781 Core DNA Replication Machinery Family AT5G63960 29.117 1.52e-86 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02153 K02350 - gmx:100777934 2980.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02153 6 21139973 21156755 Lapu6g02153 6 21139973 21156755 ECH