LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu6g02151	ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGTGGTTCGCCGGAGAGCGAAGAGAACTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCGTCTATTCCCGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGTTTCGAAGGAGAAGACACAGGCTCACATAAAAGAGCTAGAGGAAGAAGTTAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACGGGCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCTGGTGGATCCATATCATCGCTATTGGGGAAGTTTGGGGCTTTTCCCGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAATACTTGCACAAAAATGGAATTATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGTGCTAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACGAAGTCTCATCCACCAATTCCTGATCATCTCTCAGTTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCAGCTTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGCGAACATATGAATTCTCTTACTCTGTCATCTGATGTCACGGAAAATTTCGTAGCTTCTTCACCGTCGTGTGGGCCAAATGATGAATCCTTCCTTTGCTCTTCAACAGTAAATCCTTTGGACTCGGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTGATTGATGACAAAGAAGAGTTCTCGCCGAATGATGTTAAATACAAATCATTGATGTCAACTAATATTGAGAGTTTTAACCCAATGTCTGATCCCTCTGATGATTGGGGGCGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGGTGCAGATGAAAGTTACATGCCACCCGATCAGTCAGGGGATGGTAAGGAGCAAACAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCATGTTCTCCCAATGTTATTGACAGTACAAGTGATGATACTGCTTCTAGAAAATATTTGAAATTACCTCCTAAAAGCAGGTCACCAAATCGAGTACCAATGAGCACTCCATCTAAAGCCATAGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCAACTGTTGGCCGTGTAAATAACCATACTTCACAGGATATTCCAGCATCTCCCCTTAATAAATGGAAAGGACTAATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAACGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCCAAGGATCGAGCTTTACATCGGCAGAGGGAACGAACAAGATTTGCTTCTCCCAACAAATAA	1971	0.4455	MQDIFGSVRRSLVFRGSPESEENSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSVSKEKTQAHIKELEEEVKLLKDLSHPNIVRYLGTGREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPALRSSASELLQHPFVTGEHMNSLTLSSDVTENFVASSPSCGPNDESFLCSSTVNPLDSGNKQLWGMSNDDDDMCVIDDKEEFSPNDVKYKSLMSTNIESFNPMSDPSDDWGRKFDASSELENREVNFGADESYMPPDQSGDGKEQTDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIDSTSDDTASRKYLKLPPKSRSPNRVPMSTPSKAIDNTGSPGSNGQSSSTVGRVNNHTSQDIPASPLNKWKGLIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPNK*	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu6g02151	656	CDD	STKc_MAPKKK	64	328	-	-
	Lapu6g02151	656	MobiDBLite	consensus disorder prediction	440	474	-	-
	Lapu6g02151	656	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	50	334	-	-
	Lapu6g02151	656	Gene3D	Transferase(Phosphotransferase) domain 1	64	353	-	-
	Lapu6g02151	656	ProSitePatterns	Protein kinases ATP-binding region signature.	71	94	IPR017441	GO:0005524
	Lapu6g02151	656	FunFam	Mitogen-activated protein kinase kinase kinase 2	64	354	-	-
	Lapu6g02151	656	SUPERFAMILY	Protein kinase-like (PK-like)	64	329	IPR011009	-
	Lapu6g02151	656	MobiDBLite	consensus disorder prediction	587	604	-	-
	Lapu6g02151	656	FunFam	Serine/threonine-protein kinase STE11	61	155	-	-
	Lapu6g02151	656	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Lapu6g02151	656	Coils	Coil	607	627	-	-
	Lapu6g02151	656	Pfam	Protein kinase domain	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g02151	656	SMART	serkin_6	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g02151	656	ProSiteProfiles	Protein kinase domain profile.	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g02151	656	MobiDBLite	consensus disorder prediction	605	627	-	-
	Lapu6g02151	656	MobiDBLite	consensus disorder prediction	538	580	-	-
	Lapu6g02151	656	Coils	Coil	98	125	-	-
	Lapu6g02151	656	MobiDBLite	consensus disorder prediction	509	656	-	-
	Lapu6g02151	656	MobiDBLite	consensus disorder prediction	637	656	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu6g02151	Lapu-Chr6	21114332	21119533	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu6g02151	1	656	MAP Kinase Kinase Kinase	AT1G54960	57.102	0.0	685

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lapu6g02151		Pkinase	6.7e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu6g02151	K20606		-	gmx:100807537	1149.04