Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02135 ATGGATCATCAAGGGCATGGCCAGAACCCATCGATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCAGGGTCGGTTGTGACATCGGTTGGGACCATTCAATCCACTGGTCAACCTGCTGGAGCTCAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCGTGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACGCTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCTGTTGGAGGGCCCGCTGATGCACTTCCATACTGCTACATGCCGCCTCAGCATGCTCCTCAAGTCGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACGTCAACCATCCCCAGAACATTAG 783 0.4725 MDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQITGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQPSPEH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02135 260 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g02135 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Lapu6g02135 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Lapu6g02135 260 Pfam Core histone H2A/H2B/H3/H4 69 164 IPR007125 GO:0003677
Lapu6g02135 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 198 - -
Lapu6g02135 260 SUPERFAMILY Histone-fold 73 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02135 Lapu-Chr6 21033130 21036435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02135 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 3.71e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu6g02135 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02135 6 21033130 21036435 Lapu7g00352 7 4346333 4347115 ECH
Lapu6g02135 6 21033130 21036435 Lapu6g02135 6 21033130 21036435 ECH
Lapu6g02135 6 21033130 21036435 Lapu7g00352 7 4346333 4347115 PCT