Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02130 ATGAAGAAACACTGTCACGCAACCCTATTCCTCCTCCTCCTCCTGTTGCCGTTAATTCCACTCGCCGTCGCGCAGGCCCAGTCCCAGCCCGATGAATACACCGACCCAAACCTAACCCGGTTCAACCCCTCTCTAGCCATAATCATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCATTTTCTCCATCTACGTACGCCACTGTGCCGATTCGCCTTCCAACAGCGTTAGGCCTCTCACTTCCGCACGCTCCAGAAGAGTCGCGCTTGGCCTTGATGCCGCCGTCATTGAAACCTTCCCCATCCTCGAGTACTCCGAGGTCAAGATCCACAAGATCGGGAAAGAACCCTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTACCAACAGACTCCCAGGATTCTGACGCCAACAACGCTGATGCTGCTGTTCCCGATCCCCAAACGTTGACGCCAGACGTCGAAGCCCAAAACGACGCCTTCGAAGCCGCCCCAGACCAGCAAAACGCCGACTCTGATCGTATCTTAACTGAACCCGAAGTTGTTCATCTGGAAAAAACGCTGAACCGGAACCGCACACGTGGATCACGGTCGAACCGACCCCGCCGGTTCTCGAAGTCGCACTCGACCGGCCACTCGATCGTCCAACCGGGCGAAAACACTGACCGGTTCACTTTGAGACTTCCTTTGGAGGTTCGCAAACAGCTAATAAACCGGCAATTGCATCGTGCGAGTAGCCTGATCGTGTTACCGAGGGAAAATAGTTCGAGGCAGGGTTACCGAACCGGAGGAGAAGGGAGTAGTAGGGGGAAACATTCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGATGGATCTTCTCGATAGCTGCGCCGTTTTTCGCGAGGGCGCTGTCAATTCGATCCCCCAGGGTGCGCAATAACGACGTTGAAGCATCGTCTTCCTCCGCGCCGATTATGCCGCCGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1113 0.5642 MKKHCHATLFLLLLLLPLIPLAVAQAQSQPDEYTDPNLTRFNPSLAIIIVILVAALFVMAIFSIYVRHCADSPSNSVRPLTSARSRRVALGLDAAVIETFPILEYSEVKIHKIGKEPLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTDSQDSDANNADAAVPDPQTLTPDVEAQNDAFEAAPDQQNADSDRILTEPEVVHLEKTLNRNRTRGSRSNRPRRFSKSHSTGHSIVQPGENTDRFTLRLPLEVRKQLINRQLHRASSLIVLPRENSSRQGYRTGGEGSSRGKHSRRLDRSLKSDRWIFSIAAPFFARALSIRSPRVRNNDVEASSSSAPIMPPTAVDSARPPV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02130 370 MobiDBLite consensus disorder prediction 214 230 - -
Lapu6g02130 370 MobiDBLite consensus disorder prediction 348 370 - -
Lapu6g02130 370 SUPERFAMILY RING/U-box 113 168 - -
Lapu6g02130 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 168 IPR013083 -
Lapu6g02130 370 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lapu6g02130 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 256 - -
Lapu6g02130 370 MobiDBLite consensus disorder prediction 202 258 - -
Lapu6g02130 370 SMART ring_2 120 161 IPR001841 -
Lapu6g02130 370 FunFam E3 ubiquitin-protein ligase ATL6 80 168 - -
Lapu6g02130 370 CDD RING-H2_EL5-like 119 162 - -
Lapu6g02130 370 MobiDBLite consensus disorder prediction 290 313 - -
Lapu6g02130 370 MobiDBLite consensus disorder prediction 168 190 - -
Lapu6g02130 370 MobiDBLite consensus disorder prediction 231 245 - -
Lapu6g02130 370 Pfam Ring finger domain 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02130 Lapu-Chr6 20998853 21000383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02130 7 370 Rapid Response to Elicitors AT3G05200 40.887 6.70e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02130 K10664 - gmx:100781706 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02130 6 20998853 21000383 Lapu6g02130 6 20998853 21000383 ECH
Lapu6g02130 6 20998853 21000383 Lapu7g00348 7 4310300 4312141 PCT