Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02129 ATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTATATCCCCAACCCCAGGAACCGTTTGGCTATGCAATCAAAGACCCCTACATCCACAACAACTTCTTAGAAGGTGCTTCAGCCAACTGGGGCTATGCAGATTTCACCCTTCAAAAAGAAGATCAAGCTTCTGTCACTTTTCTGGACAACCAAACAGAGAATTATCCCTATGGAGAATGGAACTCTTCTCCTACATCCTTGTTGCCTCACAACATCAATGCGTCGAATCCTCCGTCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCAGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGAAAAAATATGGAGGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTACCTCTCTGTTCTTCGCTCTCTAATGCCGGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATCAACTTTGTCAAGGAGCTAGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAAAAAGAGGGGAAACCTGATGTGCCCTTTTCTGAGTTCTTCTCATTTCCTCAGTACTCAACAACTGCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGTGAGCAAAAGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACCGAGGAAATTGTCCTCTATTCTCTCAATGTCAAGGTGGAAGAAGATTGCAAGCTTGGATCGGTGGATGAGATAGCTGCAGCTGTATACCAAATGCTGAATAGGATCCAACAAGAGTGA 966 0.4545 MCLPEGERGMALEAVVYPQPQEPFGYAIKDPYIHNNFLEGASANWGYADFTLQKEDQASVTFLDNQTENYPYGEWNSSPTSLLPHNINASNPPSSETSNTQNNLDSSVSTPARPKRRRTKSRKNMEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPDVPFSEFFSFPQYSTTASGGCDNSAAMSEQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTEEIVLYSLNVKVEEDCKLGSVDEIAAAVYQMLNRIQQE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02129 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 194 IPR036638 GO:0046983
Lapu6g02129 321 PANTHER MAX DIMERIZATION, MAD 76 320 - -
Lapu6g02129 321 SMART finulus 136 187 IPR011598 GO:0046983
Lapu6g02129 321 MobiDBLite consensus disorder prediction 71 110 - -
Lapu6g02129 321 Gene3D - 119 196 IPR036638 GO:0046983
Lapu6g02129 321 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Lapu6g02129 321 CDD bHLH_AtFAMA_like 133 204 - -
Lapu6g02129 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Lapu6g02129 321 MobiDBLite consensus disorder prediction 71 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02129 Lapu-Chr6 20977030 20978592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02129 10 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.040 5.91e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g02129 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02129 - - gmx:100777413 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02129 6 20977030 20978592 Lapu6g02129 6 20977030 20978592 ECH
Lapu6g02129 6 20977030 20978592 Lapu8g01851 8 35768889 35771829 PCT