Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02112 ATGGTCCCAATTGATCACGCTTCTGATGACAACCAGAAAAAACGAGACTCTGGAGAAATCGTTTTGGAGAAAGAGAGAAGTGGGGTAACTCTAAGAGAACTCTTGGAAGAATGCATTATTGACACTGACAAATCTCATCAACCACCTGAATTGGCTGGTAGTCATCCAAGCTTAAGGACACAGTTTCACTGGAGGAACTTTTACAAACCGTGCAAAATGAGATCAACTAAGCATCTACCATCTTTTCCTCCAAGTTGTTTCTCAAACATAACAAAGCCTAAAAGAAAAGGCATTGGAAAAAACACTATTCTTTGTAATCCACACAGTTCCAGAACTTTGGTGAATTTCAGGCTTTCTGTCCTGAGAAATGCAACCAACAATTTTAGCAATGGGAATATAATTGGAAGAGGTGGCTATGCTAATGTTTACTTGGGTAGCCTACAAGATGGGCAACTAATAGCAGTTAAGCAACTGACTAGAGGGACTCCAGAAGACAGGATATCAATTCTTCTATCTGAGCTTGGAATTCTTGCTCATGTTGACCATCCCAATACTGCCATGCTAATTGGATTTGGAGTAGAAGAGGGAATGCACCTTGTCTTCCAATTATCTCCTCTGGGAAATTTAGGATCTCTTCTTCATGGTCCAAATAAAAATGCATTAGATTGGAGTAAAAGGTATAAAATTGTTTTGGGGATAGCGGATGGCCTCCTCTATCTTCATGAGATTTGTCCAAGGCGAATCATTCATAGAGATCTTAAATCAGATAATATTCTGCTCACAGAGAATTTCGAGCCACAGATTTGTGATTTTGGGCTCTCAAAATGGCTACCAGAAACGTGTACTCATCATATTGTACCAAAATTTGAAGGCACAATGGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAAACGAGAAAACTGATATTTATTCCTTTGGGGTCTTGCTTTTGGAGATTATAACTGGGCGTCATGCTTTGAATCATTTGAAAGAAAGTATTGTGTTATGGGCAAAGCCTTTATTTCAAGCTAATAATATTAAGGACCTTGTTGATCCTTCTCTGGGTAATGATTATGACTGGGAACAAATGGAACGTGTTGTTTTGACTGCATCTCTGTGTGTTGAGCAGTATCCTATCTTACGCCCCAGCATGAGTCAGATTGCAATACTGCTAAGAGGTGATGACTATGTGATGGAACATACTGAGAGGAGTAACAAGATGCTCAAGAATACAACTCAAGGAGCTATCTAA 1260 0.3929 MVPIDHASDDNQKKRDSGEIVLEKERSGVTLRELLEECIIDTDKSHQPPELAGSHPSLRTQFHWRNFYKPCKMRSTKHLPSFPPSCFSNITKPKRKGIGKNTILCNPHSSRTLVNFRLSVLRNATNNFSNGNIIGRGGYANVYLGSLQDGQLIAVKQLTRGTPEDRISILLSELGILAHVDHPNTAMLIGFGVEEGMHLVFQLSPLGNLGSLLHGPNKNALDWSKRYKIVLGIADGLLYLHEICPRRIIHRDLKSDNILLTENFEPQICDFGLSKWLPETCTHHIVPKFEGTMGYFAPEYLMHGIVNEKTDIYSFGVLLLEIITGRHALNHLKESIVLWAKPLFQANNIKDLVDPSLGNDYDWEQMERVVLTASLCVEQYPILRPSMSQIAILLRGDDYVMEHTERSNKMLKNTTQGAI* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02112 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Lapu6g02112 419 SUPERFAMILY Protein kinase-like (PK-like) 106 393 IPR011009 -
Lapu6g02112 419 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 205 408 - -
Lapu6g02112 419 Gene3D Phosphorylase Kinase; domain 1 91 202 - -
Lapu6g02112 419 SMART serkin_6 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02112 419 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g02112 419 Pfam Protein tyrosine and serine/threonine kinase 131 338 IPR001245 GO:0004672|GO:0006468
Lapu6g02112 419 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Lapu6g02112 419 ProSiteProfiles Protein kinase domain profile. 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02112 419 Gene3D Transferase(Phosphotransferase) domain 1 205 416 - -
Lapu6g02112 419 PANTHER OS08G0249100 PROTEIN 14 410 IPR046958 -
Lapu6g02112 419 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02112 Lapu-Chr6 20810384 20814111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02112 113 400 Receptor kinase-like Gene Family AT1G53420 40.741 5.25e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lapu6g02112 PK_Tyr_Ser-Thr 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02112 - - gmx:113001177 631.328