Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02067 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAGTATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGAGCTTCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCCAGTGGTGTTATGTTTCCTGAAGAGAAACTATGTAAGTGGCTCGTTCAGCTTCTTATGGCGCTTGATTACTTGCATGTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTATATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAAGCCCTGATTAACAAAATTAATAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTTAAAAGCATGCTGAGGAAAAATCCGGAACTTAGACCTAGTGCTGCAGAGCTACTCGGGCACCAACATCTTCAACCATATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCCAGAATCCAACTACATGAAGAAAGCTAGATTTTTGAAGTCAGAAGATGATCCTGTTTCTGTCTCTGGGTATAAGTGGCATTCTTTTAGCAATGATAGGACCTTAAATCCTAGTGTATCAGGAGCGGAGGTAGATTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTATTGGAGACAACCACGATTTGAAGTCACTCCATAAGTCAGCTGTTTCGAGAACGTCTAGTAATTCCAGGACTCCTAGGCTATCTGCCTCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAATATGAAACAACCTGTTCATACAACTCGCAGAGCATCACTGCCGTTCCCACGAAGTTGTGCCATTCAGCAGCCTCCTCGCAGGCCCAGTACTGGTTCACTTTACCATGTAAATTCACCCAATATTTCAGTTAACTCTCCTCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAACGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACGATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACAGCTGGGGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGATACTTCGTCATTCCAACAAAGGGCGGATGCATTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTACGGAGAACTTGGAGTGTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCGCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAACCGAGAACAATCCACTTAA 1866 0.4255 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHQHLQPYVLKVHLKINSPRRSTLPGLWPESNYMKKARFLKSEDDPVSVSGYKWHSFSNDRTLNPSVSGAEVDSLCSTLEIDCTPDNLNQRFAELSIGDNHDLKSLHKSAVSRTSSNSRTPRLSASKASATPKKSMVSSKNHKTLPVSHNMKQPVHTTRRASLPFPRSCAIQQPPRRPSTGSLYHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSMLKKNDEDKSGSSDQNATAGASSHNSSDLRRRQFDTSSFQQRADALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQST* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02067 621 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02067 621 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02067 621 MobiDBLite consensus disorder prediction 419 445 - -
Lapu6g02067 621 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 571 - -
Lapu6g02067 621 MobiDBLite consensus disorder prediction 362 400 - -
Lapu6g02067 621 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lapu6g02067 621 MobiDBLite consensus disorder prediction 361 400 - -
Lapu6g02067 621 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Lapu6g02067 621 MobiDBLite consensus disorder prediction 532 547 - -
Lapu6g02067 621 MobiDBLite consensus disorder prediction 468 488 - -
Lapu6g02067 621 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02067 621 MobiDBLite consensus disorder prediction 524 556 - -
Lapu6g02067 621 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Lapu6g02067 621 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Lapu6g02067 621 FunFam Serine/threonine-protein kinase Nek2 84 274 - -
Lapu6g02067 621 CDD STKc_Nek 3 258 - -
Lapu6g02067 621 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lapu6g02067 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu6g02067 621 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02067 Lapu-Chr6 20360026 20367624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02067 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 4.24e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lapu6g02067 Pkinase 2.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02067 K08857 - gmx:100796019 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02067 6 20360026 20367624 Lapu6g02067 6 20360026 20367624 ECH
Lapu6g02067 6 20360026 20367624 Lapu7g01397 7 29409372 29417627 PCT