Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02060 ATGGCTAGCATTTGTTTGGAGGAGAAGGTCTTCTCTCAATTTTTATCAAGTCTTAGGGTTCTTGCTATTGATACTGACCCTACAATTCTTGAATTCATCAAGAAAATATGCGATCGATATCGTTATCAAGTTATCACATGCACAGAATCCCTACGTGCTGCGAATATTTTGCGGGAAAGAAAAACGAATATTCATTTGGTACTCATGGAGGTTCATATGCCAAATATGGATGGCTATGATTTCCTACTTGCCAACGAGGAAATCAATGTTCCTGTCATCATGATGTCTTTGGATGGTAATAAGAGTTCTGTGATGAAGACTATTAAACTTGGAGCTTGTGATTATTGGATTAAGCCTTTGCAAGAAGATCGACTCAAGAATATGTGGACACACGTTGCTAAGAAGTTCATGAGTGAGAATAAGATGCAAAAATATATTTGCAGCTTGGAAGATGATAATCAGAAAAGAATGATCAGTGATAATTCTGAACTTGTTTTTTCTTCTGCTGTTGAAAGTCCCAGAGAAGTTGATGATGTTGGTGAATGTGAGAAATGTGATCCATCTCCAAGAAAGAAGTATCGTGTAGTATGGACATTAGAATTGCATCGTAAATTTGTCGAAGCTGTCAATCAACTTGGACTTGCAAATGCTGTGCCAAACAAAATTCTTGAACTCATGAACTTGCCCGGTTTGACAAGAAACCATGTTGCTAGTCATTTGCAGAAATACAGAAATACGTTGAAGACGAAATCTAATATTGGAGAGAAACAGAGACAACCACGGAATGAGATGTCAAGGACCATAGAACCTACAGGAGCAGATCTGCATGCTGGTCTTATAGGTAACATGGTTGCAAAAAGAGAGCATCAATCTGCCTCAGATAACCCGTTTCATGCAGAACAAGCTTTGGGTTTGGCAAATGGTGACCCTCTGGTTACCTATCTTAACACTGCTATTCTCCACAATTTTCCACAGTCCATGGGAACTTTAGATGATGCATATAGACATGGAATATGGTCTCCATATAATACAGTGTTAGCTGAAAACCAGGTTATGCTTCAGAGCAACAATGCGTTAGTGGATACATTGCAGCAGCAGCAGCAGCAGCAGCAAATGCAACAGTCTTTGATGCAGCATCAAATTCATCCAATCAACTTCCATGATAATCCATATTTGGTCATCCAGAATGATAATTTTGGCAGGAATATTGATCACAGAAGAATCTAG 1227 0.3879 MASICLEEKVFSQFLSSLRVLAIDTDPTILEFIKKICDRYRYQVITCTESLRAANILRERKTNIHLVLMEVHMPNMDGYDFLLANEEINVPVIMMSLDGNKSSVMKTIKLGACDYWIKPLQEDRLKNMWTHVAKKFMSENKMQKYICSLEDDNQKRMISDNSELVFSSAVESPREVDDVGECEKCDPSPRKKYRVVWTLELHRKFVEAVNQLGLANAVPNKILELMNLPGLTRNHVASHLQKYRNTLKTKSNIGEKQRQPRNEMSRTIEPTGADLHAGLIGNMVAKREHQSASDNPFHAEQALGLANGDPLVTYLNTAILHNFPQSMGTLDDAYRHGIWSPYNTVLAENQVMLQSNNALVDTLQQQQQQQQMQQSLMQHQIHPINFHDNPYLVIQNDNFGRNIDHRRI* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02060 408 Gene3D - 189 249 - -
Lapu6g02060 408 Gene3D - 17 152 - -
Lapu6g02060 408 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 343 IPR045279 GO:0009736
Lapu6g02060 408 CDD REC_typeB_ARR-like 20 133 - -
Lapu6g02060 408 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lapu6g02060 408 Pfam Myb-like DNA-binding domain 194 244 IPR001005 -
Lapu6g02060 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 248 IPR017930 -
Lapu6g02060 408 SUPERFAMILY CheY-like 16 165 IPR011006 -
Lapu6g02060 408 ProSiteProfiles Response regulatory domain profile. 19 133 IPR001789 GO:0000160
Lapu6g02060 408 FunFam Two-component response regulator 188 251 - -
Lapu6g02060 408 SMART REC_2 18 129 IPR001789 GO:0000160
Lapu6g02060 408 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Lapu6g02060 408 SUPERFAMILY Homeodomain-like 190 248 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02060 Lapu-Chr6 20328305 20330022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02060 7 252 Response Regulator Gene Family AT4G31920 40.400 4.26e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu6g02060 Response_reg 2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02060 - - vra:106778071 395.586