Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02049 ATGGAAAGGGTGTTGTCAGTGGATGAGATATCAGAGCAATATTGGGTGGCAGCCAGGAAGGAATCATGCAAGTCAAAGTCAAACATGAATCGCAGTGAATCGGAATGGGCCTTGCAGCAGTTTCTGCAGGAAGCAGCTTCTCCTTCTTCATCTTCTTCTTCTGATGTTAAACCCGAAAAGGATCCCGACATCAACATCAACATCGACATCCCTCTAACTCTAAATGTCGATTCCCAGGATTACCAAACCATTCTCAAGACCAAGCTTAACCTCGCCTGTGCTGCTGTCGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCACAGGCATATGTTTCTTCTGAAGTTGGATCGCAACCTACCTTAAAAGATGTCAAAGCACCAATTGGGATTCCTTCCTCACCTTCCCTGCAAAAGAAACCTGTTGTTGCAGTGAGGCCAACAATAAGTGGATCATCAAGAGAACAATCAGATGATGAGGAGGCGGATGAAGAGATTAATATGACTGAAAGCATGAATCCAACTGATGCAAAACGAGTAAGGAGGATGCTATCTAATAGGGAGTCTGCCAGACGCTCGAGAAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCTTTGTCAAAGCGCTTAACGGATGTGAGCCAGAGATACAATAATGCTGCAGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACATTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGCTTGAACCCAATGTTTCATGCCATGACTGAGATGTCATCACTGGAAATACCATTGTTTGATGGAAGTCCTTCTGAGACATCAGCTGATGCTGCTGTTCCTGTGCAAGAAGACTCAAATCATCACCTTTGTCAAGCCACTTCTAACAATGGATTCGGTGGCATTTCTTCAATTAAAACTGTGCAGCAGAACGTTGCAGCAGTGGTAGGTGGGAACAAAACTGGGGGAGCAACCTCCCTGCGTAGAGTAGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGAAGATTCACGTGGACCTCCCTCTAGTGGAGAGCTATAA 1134 0.4497 MERVLSVDEISEQYWVAARKESCKSKSNMNRSESEWALQQFLQEAASPSSSSSSDVKPEKDPDININIDIPLTLNVDSQDYQTILKTKLNLACAAVALTRGSLVKSQNPTTFPDSGSQAYVSSEVGSQPTLKDVKAPIGIPSSPSLQKKPVVAVRPTISGSSREQSDDEEADEEINMTESMNPTDAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLSKRLTDVSQRYNNAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHAMTEMSSLEIPLFDGSPSETSADAAVPVQEDSNHHLCQATSNNGFGGISSIKTVQQNVAAVVGGNKTGGATSLRRVASLEHLQKRIRGEDSRGPPSSGEL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02049 377 MobiDBLite consensus disorder prediction 139 183 - -
Lapu6g02049 377 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 239 IPR004827 GO:0003700|GO:0006355
Lapu6g02049 377 MobiDBLite consensus disorder prediction 193 212 - -
Lapu6g02049 377 SUPERFAMILY Leucine zipper domain 187 237 IPR046347 GO:0003700|GO:0006355
Lapu6g02049 377 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Lapu6g02049 377 Gene3D - 186 241 - -
Lapu6g02049 377 Pfam Basic leucine-zipper C terminal 254 366 IPR020983 -
Lapu6g02049 377 MobiDBLite consensus disorder prediction 43 62 - -
Lapu6g02049 377 PANTHER BASIC LEUCINE ZIPPER 63 1 367 - -
Lapu6g02049 377 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Lapu6g02049 377 CDD bZIP_plant_GBF1 188 239 IPR045314 GO:0003700|GO:0006355
Lapu6g02049 377 FunFam BZIP transcription factor 185 236 - -
Lapu6g02049 377 Pfam bZIP transcription factor 186 238 IPR004827 GO:0003700|GO:0006355
Lapu6g02049 377 Coils Coil 196 230 - -
Lapu6g02049 377 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02049 Lapu-Chr6 20258890 20263681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02049 1 276 bZIP Transcription Factor Family AT4G02640 41.401 7.62e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lapu6g02049 bZIP_C 1.6e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02049 6 20258890 20263681 Lapu6g02049 6 20258890 20263681 ECH
Lapu6g02049 6 20258890 20263681 Lapu7g01403 7 29467426 29478122 PCT