Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02046 ATGACTATGGAGGCGGAGCGTGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGCTCCCACTGAGTGCCAACGAGGGCGACTCCACGCTCATCAAAAACACTTCCACTGCTTCCTTTACTGGGAAGAGAGGGTTTTCGGATACAAGCAGTGCTAGCGTGGATTTGAAGCTTAACCTTTCCTCAGCCTCAAACAATGTCTCCGTCTCACCCTCTTCCGACATCGCCAGAGAGAACAACGCTTCTCCTACTGCTAACATCACCGCACCTCCTTCTCCTCCTCCTGTTAAGGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATTCAGAAAGAACATAGTTAACAATGTTCAAAAGAGTAACAACAACAACAAAGAGGTGGTAAAAGGTGGCACAAGTAGCAGCAACAAGGGGAACACAGGAGCAGCAGCTTTTGTTAAAGTGAGCATGGACGGTGCTCCCTATCTACGTAAGGTAGATTTGAAGGTGTACAAGAGCTATCAAGAGCTGTCGGATTCACTGGCAAAAATGTTCAGTTCCTTCACCATTGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAATTGATTGATTTTCTCAACGGCTCTGATTACGTACCAACCTATGAAGATAAAGATGGAGATTGGATGCTGGTGGGGGATGTACCCTGGGAAATGTTCGTGGAATCATGCAAGCGCGTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCGAGAGCAGTGGAGAAGTGCAAGAACAGAAGCTAG 822 0.483 MTMEAERDKYKMIDFEETELRLGLPLSANEGDSTLIKNTSTASFTGKRGFSDTSSASVDLKLNLSSASNNVSVSPSSDIARENNASPTANITAPPSPPPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNVQKSNNNNKEVVKGGTSSSNKGNTGAAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCGSQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRVRIMKGSEAIGLAPRAVEKCKNRS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02046 273 FunFam Auxin-responsive protein 150 265 - -
Lapu6g02046 273 Gene3D - 150 267 - -
Lapu6g02046 273 MobiDBLite consensus disorder prediction 91 105 - -
Lapu6g02046 273 MobiDBLite consensus disorder prediction 67 112 - -
Lapu6g02046 273 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 260 IPR003311 GO:0005634|GO:0006355
Lapu6g02046 273 MobiDBLite consensus disorder prediction 67 90 - -
Lapu6g02046 273 SUPERFAMILY CAD & PB1 domains 145 254 - -
Lapu6g02046 273 Pfam AUX/IAA family 17 264 IPR033389 -
Lapu6g02046 273 ProSiteProfiles PB1 domain profile. 155 255 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02046 Lapu-Chr6 20232399 20235770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02046 140 263 B3 DNA Binding Superfamily AT4G23980 31.452 5.95e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu6g02046 AUX_IAA 9.1e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02046 K14484 - gmx:100796888 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02046 6 20232399 20235770 Lapu6g02046 6 20232399 20235770 ECH