Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02020 ATGGACTCAAGCAAAATGTTATCTGCAGAAGACAAAAAAATATCGTCAAAGATCTTTGCACAGAAAATCATCAAGCCATCTCAAACATTCACGGAAGATGTTAAGCCCAAAACCACTTCACATGCATCACATTCATCGTTGAGTGAGGTAAAAAAGATCTCTAATTTACCTCGTGGGTCAGCTAAAGATAGAGAATCAGACCCTGAGAAAGCATCATCTGCAGGGCACTGTGGTCAGTTCGAGAAGAACCTTGTGAAGCCAAGAGCTAAGAAACCCAAGTTACTTACTTCGACGTATCATGATGAAGGAGATCTTTGTGTTAAACCTCTCTCAACTCATCATCAGGATATGCAAAGTAAAAATGTTGTACCAGCATGCATCAATAGTACCCGAGCTTCTAATGGAAATATTATGGTCGCTAGTTCTTCTAGTCTTGAAGAAGTTAAAATGTCTTTGAATTGTGACGCAGCCTTGGCAGGACTAAACTTCAGTATTCCTAATTTGGACGTTGTTATGAAGTTCATGGACAGGAAGTACCTTAGCTCTTGCAAAACTGTTGAACCTCAATTTTCTACGGCAAAGCTGTTAAATGATCTTTGTAGTATTTTTCTCAAGTTGGGGCTTCGAAAGGGATCAAATTCCAATCAGGCCAGTTCACATTCACTGCAACACGTTCATCAAGGTGAAAGGAAACCCTTTAATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAATTTGGCGGTGACGACTTGCCAAAGTTTAATTACATACCATATAGTATAATATATCAAAGTGCTATTGTAAGTATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGAATGTTCAGGCGACTGTCTTTCCTCGTCATTGCCTTGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAACAGCTTGCGTGACTATGAAGAATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCCAAGAATGAGTACATGCCTGAACGATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGTGGATGTGACATGCTTTGTGGGAATAGGATAGTGCAACGAGGTATTGCATGCAAATTGCAGGTGTTCTTAACACGAGAAGGTAAAGGTTGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTCGTGTGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATTATGCATGAGAGTGGCAACGACAGACATACATATCCTGTAACTCTTGATGCGGACTGGGCCTCAGAAAAGGGGTTAAAGGATGAGGAGGCGCTATGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCATCATTATTATCATCTTGCCTTCTTTACCAACAGGAATGTGAGTGCATATGAGGAATTGACATGGGATTATGGTATTGATTTTGATGATGAGGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGTGCCTTCTGCTGTGATAAGAAACGAAAAGGGAAAGGAAAAATAAAAAATCAGGTTCTTGAAAAGTAG 1707 0.3948 MDSSKMLSAEDKKISSKIFAQKIIKPSQTFTEDVKPKTTSHASHSSLSEVKKISNLPRGSAKDRESDPEKASSAGHCGQFEKNLVKPRAKKPKLLTSTYHDEGDLCVKPLSTHHQDMQSKNVVPACINSTRASNGNIMVASSSSLEEVKMSLNCDAALAGLNFSIPNLDVVMKFMDRKYLSSCKTVEPQFSTAKLLNDLCSIFLKLGLRKGSNSNQASSHSLQHVHQGERKPFNFISDITKGSEKVKISLIDEFGGDDLPKFNYIPYSIIYQSAIVSISLARISDEGCCSECSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLTACVTMKNEPQDHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMLCGNRIVQRGIACKLQVFLTREGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYDRIMHESGNDRHTYPVTLDADWASEKGLKDEEALCLDATYNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRNVSAYEELTWDYGIDFDDEDHPIKAFRCSCGSAFCCDKKRKGKGKIKNQVLEK* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02020 568 ProSiteProfiles Pre-SET domain profile. 292 391 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu6g02020 568 SMART set_7 394 534 IPR001214 GO:0005515
Lapu6g02020 568 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 88 566 IPR025776 -
Lapu6g02020 568 SMART preset_2 236 378 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu6g02020 568 Pfam Pre-SET motif 239 386 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu6g02020 568 MobiDBLite consensus disorder prediction 56 71 - -
Lapu6g02020 568 Pfam SET domain 406 528 IPR001214 GO:0005515
Lapu6g02020 568 SUPERFAMILY SET domain 246 550 IPR046341 -
Lapu6g02020 568 FunFam SET-domain containing protein lysine methyltransferase family protein 239 553 - -
Lapu6g02020 568 Gene3D SET domain 212 540 IPR046341 -
Lapu6g02020 568 ProSiteProfiles SET domain profile. 394 528 IPR001214 GO:0005515
Lapu6g02020 568 CDD SET_SETDB-like 260 528 - -
Lapu6g02020 568 MobiDBLite consensus disorder prediction 29 53 - -
Lapu6g02020 568 MobiDBLite consensus disorder prediction 29 83 - -
Lapu6g02020 568 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 54 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02020 Lapu-Chr6 19979211 19991609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02020 235 550 Su(var)3-9 homologs AT5G04940 28.571 1.75e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu6g02020 Pre-SET 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02020 - - vun:114188074 979.163