Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02005 ATGGAGCAATCGCTGTTGGATGACATAATCAATCGCCTCCTCCAACTTCGCACCCGACCGGGGAAGCAGGTTCAGCTATCGGAGTCCGAGATCCGTCAACTCTGCGTCGTTTCCAGAAACATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCGCCTATTAAGATTTGTGGTGATGTACATGGCCAATATTCTGATCTCTTGAGGCTTTTCGAGTATGGTGGATTACCTCCCGAAGCTAACTACCTGTTTTTGGGGGATTATGTGGATCGAGGGGAGCAGAGTTTAGAAACAATTTGCCTTCTCCTAGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTGTTAAGGGGAAACCATGAATGTGCCTCTATAAACCGAATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAGTGTAAAGTTATGGAAGGCATTTACAGAGTGCTTCAATTGCCTGCCCGTGGCAGCCCTTGTTGATGAAAAAATTTTGTGTATGCATGGAGGACTTTCTCCTGATTTAGTTAATTTAGATCAGATTAGAAATCTACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTCCTTTGGTCTGACCCAAGCAAAGAAGTTCAAGAATGGGGAATGAATGATAGAGGAGTTTCATATACATTTGGTGCAGATAAGGTCTCAGAGTTTCTTCAGAAACTTGATCTTGATCTTGTTTGTCGAGCCCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCCCCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATGAAAAAGCAAAGCACAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCAGGTGTAAAGCCAGCTGAGAAAAAAGGAAAGCACAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGAACGTGGAAAGTCCTTCATGGGAGCGAAAGCGTGA 1059 0.4278 MEQSLLDDIINRLLQLRTRPGKQVQLSESEIRQLCVVSRNIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGEQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVKLWKAFTECFNCLPVAALVDEKILCMHGGLSPDLVNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQEWGMNDRGVSYTFGADKVSEFLQKLDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADEKAKHNFGSTTTAKPGNSPAGVKPAEKKGKHNFGSTTTAKPGNSPERGKSFMGAKA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02005 352 MobiDBLite consensus disorder prediction 301 352 - -
Lapu6g02005 352 SUPERFAMILY Metallo-dependent phosphatases 16 298 IPR029052 -
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lapu6g02005 352 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Lapu6g02005 352 FunFam Serine/threonine-protein phosphatase 52 305 - -
Lapu6g02005 352 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Lapu6g02005 352 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Lapu6g02005 352 CDD MPP_PP1_PPKL 6 294 - -
Lapu6g02005 352 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Lapu6g02005 352 Gene3D - 1 305 IPR029052 -
Lapu6g02005 352 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 12 302 - -
Lapu6g02005 352 SMART pp2a_7 26 296 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02005 Lapu-Chr6 19835668 19840918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02005 33 240 Calmodulin-binding Proteins AT5G63870 29.839 1.27e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02005 K06269 - cave:132171614 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02005 6 19835668 19840918 Lapu7g00067 7 718353 722360 ECH
Lapu6g02005 6 19835668 19840918 Lapu6g02005 6 19835668 19840918 ECH